2022 Publications

Adams, Sally, and Isabelle A. Carré. “Chromatin Immunoprecipitation Protocol for Circadian Clock Proteins.” In Plant Circadian Networks, edited by Dorothee Staiger, Seth Davis, and Amanda Melaragno Davis, 2398:135–50. Methods in Molecular Biology. New York, NY: Springer US, 2021. https://doi.org/10.1007/978-1-0716-1912-4_12.

Aggarwal, Suruchi, Anurag Raj, Dhirendra Kumar, Debasis Dash, and Amit Kumar Yadav. “False Discovery Rate: The Achilles’ Heel of Proteogenomics.” Briefings in Bioinformatics, May 9, 2022, bbac163. https://doi.org/10.1093/bib/bbac163.

Alawadi, Ayad A., Vagner A. Benedito, R. Chris Skinner, Derek C. Warren, Casey Showman, and Janet C. Tou. “RNA-Sequencing Revealed Apple Pomace Ameliorates Expression of Genes in the Hypothalamus Associated with Neurodegeneration in Female Rats Fed a Western Diet during Adolescence to Adulthood.” Nutritional Neuroscience, March 17, 2022, 1–13. https://doi.org/10.1080/1028415X.2022.2050008.

Alviar, Karen B., Dorith Rotenberg, Kathleen M. Martin, and Anna E. Whitfield. “The Physical Interactome between Peregrinus Maidis Proteins and the Maize Mosaic Virus Glycoprotein Provides Insights into the Cellular Biology of a Rhabdovirus in the Insect Vector.” Virology 577 (December 2022): 163–73. https://doi.org/10.1016/j.virol.2022.10.002.

Amos, Beatrice, Cristina Aurrecoechea, Matthieu Barba, Ana Barreto, Evelina Y Basenko, Wojciech Bażant, Robert Belnap, et al. “VEuPathDB: The Eukaryotic Pathogen, Vector and Host Bioinformatics Resource Center.” Nucleic Acids Research 50, no. D1 (January 7, 2022): D898–911. https://doi.org/10.1093/nar/gkab929.

Amundson, Kaela K., Mikayla A. Borton, Rebecca A. Daly, David W. Hoyt, Allison Wong, Elizabeth Eder, Joseph Moore, Kenneth Wunch, Kelly C. Wrighton, and Michael J. Wilkins. “Microbial Colonization and Persistence in Deep Fractured Shales Is Guided by Metabolic Exchanges and Viral Predation.” Microbiome 10, no. 1 (January 16, 2022): 5. https://doi.org/10.1186/s40168-021-01194-8.

Andrade-Martínez, Juan Sebastián, Laura Carolina Camelo Valera, Luis Alberto Chica Cárdenas, Laura Forero-Junco, Gamaliel López-Leal, J. Leonardo Moreno-Gallego, Guillermo Rangel-Pineros, and Alejandro Reyes. “Computational Tools for the Analysis of Uncultivated Phage Genomes.” Microbiology and Molecular Biology Reviews 86, no. 2 (March 21, 2022): e00004-21. https://doi.org/10.1128/mmbr.00004-21.

Andrianjakarivony, Harilanto Felana, Yvan Bettarel, Fabrice Armougom, and Christelle Desnues. “Phage-Host Prediction Using a Computational Tool Coupled with 16S RRNA Gene Amplicon Sequencing.” Viruses 15, no. 1 (December 27, 2022): 76. https://doi.org/10.3390/v15010076.

Arras, Philipp, Philipp Frank, Philipp Haim, Jakob Knollmüller, Reimar Leike, Martin Reinecke, and Torsten Enßlin. “Variable Structures in M87* from Space, Time and Frequency Resolved Interferometry.” Nature Astronomy 6, no. 2 (February 2022): 259–69. https://doi.org/10.1038/s41550-021-01548-0.

Balk, Meghan A., John Deck, Kitty F. Emery, Ramona L. Walls, Dana Reuter, Raphael LaFrance, Joaquín Arroyo-Cabrales, et al. “A Solution to the Challenges of Interdisciplinary Aggregation and Use of Specimen-Level Trait Data.” IScience, September 2022, 105101. https://doi.org/10.1016/j.isci.2022.105101.

Balushi, Mohammed Al, Rajesh Kumar, Azza Al-Rashdi, Amin Ratna, Ahood Al-Jabri, Neima Al-shekaili, Ramasandhya Rani, et al. “Genomic Analysis of the Emerging Carbapenem-Resistant Klebsiella Pneumoniae Sequence Type 11 Harbouring Klebsiella Pneumoniae Carbapenemase (KPC) in Oman.” Journal of Infection and Public Health 15, no. 10 (October 2022): 1089–96. https://doi.org/10.1016/j.jiph.2022.08.014.

Barakhshan, Parinaz, and Rudolf Eigenmann. “Exchanging Best Practices for Supporting Computational and Data-Intensive Research, The Xpert Network.” In Practice and Experience in Advanced Research Computing, 1–7. Boston MA USA: ACM, 2022. https://doi.org/10.1145/3491418.3530293.

Beck, Michael A, Chen-Yi Liu, Christopher P Bidinosti, Christopher J Henry, Cara M Godee, and Manisha Ajmani. “An Extensive Lab-and Field-Image Dataset of Crops and Weeds for Computer Vision Tasks in Agriculture,” 2021.

Bendaoud, Farah, Gunjune Kim, Hailey Larose, James H. Westwood, Nadjia Zermane, and David C. Haak. “Genotyping‐by‐sequencing Analysis of Orobanche Crenata Populations in Algeria Reveals Genetic Differentiation.” Ecology and Evolution 12, no. 3 (March 2022). https://doi.org/10.1002/ece3.8750.

Bhinda, Mahender Singh, Sanjay Kumar Sanadya, Asha Kumari, Laxmi Kant, and Ashim Debnath. “Omics for Abiotic Stress Tolerance in Foxtail Millet.” In Omics of Climate Resilient Small Millets, edited by Ramesh Namdeo Pudake, Amolkumar U. Solanke, Amitha Mithra Sevanthi, and P. Rajendrakumar, 27–52. Singapore: Springer Nature Singapore, 2022. https://doi.org/10.1007/978-981-19-3907-5_2.

Blake Steiner. “Delayed Tree Dormancy Resulted in Higher Annual Savanna Gross Primary Productivity in the Northern Sonoran Desert.” The University of Arizona, 2022. https://www.proquest.com/openview/fdf40aa85eba055900d00ecc904606d5/1?pq-origsite=gscholar&cbl=18750&diss=y.

Boeckman, Justin, Abby Korn, Guichun Yao, Aravind Ravindran, Carlos Gonzalez, and Jason Gill. “Sheep in Wolves’ Clothing: Temperate T7-like Bacteriophages and the Origins of the Autographiviridae.” Virology 568 (March 2022): 86–100. https://doi.org/10.1016/j.virol.2022.01.013.

Braga, Lucas P. P., Chloé Orland, Erik J. S. Emilson, Amelia A. Fitch, Helena Osterholz, Thorsten Dittmar, Nathan Basiliko, Nadia C. S. Mykytczuk, and Andrew J. Tanentzap. “Viruses Direct Carbon Cycling in Lake Sediments under Global Change.” Proceedings of the National Academy of Sciences 119, no. 41 (October 11, 2022): e2202261119. https://doi.org/10.1073/pnas.2202261119.

Buchholz, Holger H., Luis M. Bolaños, Ashley G. Bell, Michelle L. Michelsen, Michael J. Allen, and Ben Temperton. “A Novel and Ubiquitous Marine Methylophage Provides Insights into Viral-Host Coevolution and Possible Host-Range Expansion in Streamlined Marine Heterotrophic Bacteria.” Edited by Laura Villanueva. Applied and Environmental Microbiology 88, no. 7 (April 12, 2022): e00255-22. https://doi.org/10.1128/aem.00255-22.

Bunting, Matt, Rahul Bhadani, Matt Nice, Safwan Elmadani, and Jonathan Sprinkle. “Data from the Development Evolution of a Vehicle for Custom Control.” In 2022 2nd Workshop on Data-Driven and Intelligent Cyber-Physical Systems for Smart Cities Workshop (DI-CPS), 40–46. Milan, Italy: IEEE, 2022. https://doi.org/10.1109/DI-CPS56137.2022.00013.

Busta, Lucas, Ismail Dweikat, Shirley J. Sato, Haolin Qu, Yong Xue, Bangjun Zhou, Lu Gan, et al. “Chemical and Genetic Variation in Feral Cannabis Sativa Populations across the Nebraska Climate Gradient.” Phytochemistry 200 (August 2022): 113206. https://doi.org/10.1016/j.phytochem.2022.113206.

Cagirici, H. Busra, Carson M. Andorf, and Taner Z. Sen. “Co-Expression Pan-Network Reveals Genes Involved in Complex Traits within Maize Pan-Genome.” BMC Plant Biology 22, no. 1 (December 19, 2022): 595. https://doi.org/10.1186/s12870-022-03985-z.

Cardone, Richard, Joe Stubbs, Steve Black, Christian Garcia, Anagha Jamthe, Mike Packard, and Smruti Padhy. “A Design Pattern for Recoverable Job Management.” In Practice and Experience in Advanced Research Computing, 1–4. Boston MA USA: ACM, 2022. https://doi.org/10.1145/3491418.3535136.

Chakrabarti, Manohar, Padmaja Nagabhyru, Christopher L. Schardl, and Randy D. Dinkins. “Differential Gene Expression in Tall Fescue Tissues in Response to Water Deficit.” The Plant Genome 15, no. 2 (March 23, 2022). https://doi.org/10.1002/tpg2.20199.

Chávez Montes, Ricardo A., Anna Haber, Jeremy Pardo, Robyn F. Powell, Upendra K. Divisetty, Anderson T. Silva, Tania Hernández-Hernández, et al. “A Comparative Genomics Examination of Desiccation Tolerance and Sensitivity in Two Sister Grass Species.” Proceedings of the National Academy of Sciences 119, no. 5 (February 1, 2022): e2118886119. https://doi.org/10.1073/pnas.2118886119.

Chiozzi, Giorgio, Giuseppe De Marchi, Mauro Fasola, Kamal M. Ibrahim, Giorgio Bardelli, Futsum Hagos, Francesco Rocca, and Marco Masseti. “Insular Gazelles of the Circum-Arabian Seas: Origin, Distribution, Dwarfism and Taxonomy.” Mammalian Biology 102, no. 1 (February 2022): 1–20. https://doi.org/10.1007/s42991-021-00186-3.

Christine Natalie Palermo. “Diversity, Relative Abundance, and Functional Potential of Viral and Bacterial Communities.” University of Toronto (Canada), 2022. https://tspace.library.utoronto.ca/bitstream/1807/123204/4/Palermo_Christine_Natalie_202206_PhD_thesis.pdf.

Corwin, Lisa A., Michael E. Ramsey, Eric A. Vance, Elizabeth Woolner, Stevie Maiden, Nina Gustafson, and Joseph A. Harsh. “Students’ Emotions, Perceived Coping, and Outcomes in Response to Research-Based Challenges and Failures in Two Sequential CUREs.” Edited by Erin Shortlidge. CBE—Life Sciences Education 21, no. 2 (June 2022): ar23. https://doi.org/10.1187/cbe.21-05-0131.

Craig, Valerie. “Vegetation Index Development for High Throughput Detection of Maize (Zea Mays L.) Black Layer.” PhD Thesis, University of Guelph, 2022.

Cynthia, Shamse Tasnim. “Improving The Usability of Software Systems Using Group Discussions: A Case Study on Galaxy.” PhD Thesis, University of Saskatchewan, 2022.

Darianne M. Alvarez-Franceschi. “Macro and Microorganisms’ Behavior Based on the Janzen-Connell Hypothesis after a Hurricane in El Yunque National Rainforest.” Ana G. Mendez University, 2022. https://www.proquest.com/docview/2677675985?pq-origsite=gscholar&fromopenview=true.

Das, Debashis, Niraj Vasant Altekar, and K. Larry Head. “Priority-Based Traffic Signal Coordination System With Multi-Modal Priority and Vehicle Actuation in a Connected Vehicle Environment.” Transportation Research Record: Journal of the Transportation Research Board, November 25, 2022, 036119812211346. https://doi.org/10.1177/03611981221134627.

DeBarry, Jeremy D., Mustafa V. Nural, Suman B. Pakala, Vishal Nayak, Susanne Warrenfeltz, Jay Humphrey, Stacey A. Lapp, et al. “MaHPIC Malaria Systems Biology Data from Plasmodium Cynomolgi Sporozoite Longitudinal Infections in Macaques.” Scientific Data 9, no. 1 (November 24, 2022): 722. https://doi.org/10.1038/s41597-022-01755-y.

Dechavez, Rande, Ma. Lyn Calub, Dona Rose Genobata, Raul Balacuit, Reizl Jose, and Sharon Rose Tabugo. “Identification of Culture-Dependent Microbes from Mangroves Reveals Dominance of Bacillus Including Medically Important Species Based on DNA Signature.” Biodiversitas Journal of Biological Diversity 23, no. 10 (October 31, 2022). https://doi.org/10.13057/biodiv/d231044.

D’Elia, Tom. “A Complete Guide to Tardigrade Isolation and Phylogenetic Characterization for Undergraduate Students V1.” Preprint, April 25, 2022. https://doi.org/10.17504/protocols.io.81wgb64qqlpk/v1.

Dirk Joldersma,  Norah Sadowski,  Winston Timp &  Zhongchi Liu, ,. “Assembly and Annotation of Fragaria Vesca ‘Yellow Wonder’ Genome, a Model Diploid Strawberry for Molecular Genetic Research.” Fruit Research 2, no. 13 (2022). https://doi.org/10.48130/FruRes-2022-0013.

Dominguez-Huerta, Guillermo, Ahmed A. Zayed, James M. Wainaina, Jiarong Guo, Funing Tian, Akbar Adjie Pratama, Benjamin Bolduc, et al. “Diversity and Ecological Footprint of Global Ocean RNA Viruses.” Science 376, no. 6598 (June 10, 2022): 1202–8. https://doi.org/10.1126/science.abn6358.

Drummond, Chloe P., Theodore S. Cochrane, and Kenneth J. Sytsma. “Western North American Plants Disjunct in the Great Lakes Region: 40 Years after Marquis and Voss.” International Journal of Plant Sciences, September 2, 2022, 000–000. https://doi.org/10.1086/721653.

Dykes, Jeff, Kristy Kappenman, and Emily D. Nissen. “Using DNA Barcoding Methods to Identify Wild Huckleberry, Vaccinium Membranaceum , as a Classroom Project.” The American Biology Teacher 84, no. 1 (January 1, 2022): 40–44. https://doi.org/10.1525/abt.2022.84.1.40.

Ehsani, Mohammad Reza, Ariyan Zarei, Hoshin Vijai Gupta, Kobus Barnard, Eric Lyons, and Ali Behrangi. “NowCasting-Nets: Representation Learning to Mitigate Latency Gap of Satellite Precipitation Products Using Convolutional and Recurrent Neural Networks.” IEEE Transactions on Geoscience and Remote Sensing 60 (2022): 1–21. https://doi.org/10.1109/TGRS.2022.3158888.

Fernandez-Pozo, Noe, Fabian B Haas, Sven B Gould, and Stefan A Rensing. “An Overview of Bioinformatics, Genomics and Transcriptomics Resources for Bryophytes.” Journal of Experimental Botany, February 11, 2022, erac052. https://doi.org/10.1093/jxb/erac052.

Fitzgerald, Caleb, Cullen S. Vens, Nathan Miller, Richard Barker, Matthew Westphall, Johnathan Lombardino, Jerry Miao, Sarah J. Swanson, and Simon Gilroy. “Using the Automated Botanical Contact Device (ABCD) to Deliver Reproducible, Intermittent Touch Stimulation to Plants.” In Plant Gravitropism, edited by Elison B. Blancaflor, 2368:81–94. Methods in Molecular Biology. New York, NY: Springer US, 2022. https://doi.org/10.1007/978-1-0716-1677-2_6.

Fox, Andrew M., Xueli Huo, Timothy J. Hoar, Hamid Dashti, William K. Smith, Natasha MacBean, Jeffrey L. Anderson, Matthew Roby, and David J. P. Moore. “Assimilation of Global Satellite Leaf Area Estimates Reduces Modeled Global Carbon Uptake and Energy Loss by Terrestrial Ecosystems.” Journal of Geophysical Research: Biogeosciences 127, no. 8 (August 2022). https://doi.org/10.1029/2022JG006830.

Gage, Joseph L., Sujina Mali, Fionn McLoughlin, Merritt Khaipho-Burch, Brandon Monier, Julia Bailey-Serres, Richard D. Vierstra, and Edward S. Buckler. “Variation in Upstream Open Reading Frames Contributes to Allelic Diversity in Maize Protein Abundance.” Proceedings of the National Academy of Sciences 119, no. 14 (April 5, 2022): e2112516119. https://doi.org/10.1073/pnas.2112516119.

Guo, Wen-Yong, Josep M. Serra-Diaz, Franziska Schrodt, Wolf L. Eiserhardt, Brian S. Maitner, Cory Merow, Cyrille Violle, et al. “High Exposure of Global Tree Diversity to Human Pressure.” Proceedings of the National Academy of Sciences 119, no. 25 (June 21, 2022): e2026733119. https://doi.org/10.1073/pnas.2026733119.

Gupta, Shreya, and Shabir A Rather. “Innovations in Crop Production: An Amalgamation of Abiotic Stress Physiology and Technology.” Plant Abiotic Stress Physiology: Volume 1: Responses and Adaptations, 2022, 1.

Hackett, Justin, Heather Gibson, Jeffrey Frelinger, and Adam Buntzman. “Using the Collaborative Cross and Diversity Outbred Mice in Immunology.” Current Protocols 2, no. 9 (September 2022). https://doi.org/10.1002/cpz1.547.

Han, Xiaoxu, Cheng Li, Shichao Sun, Jiaojiao Ji, Bao Nie, Garth Maker, Yonglin Ren, and Li Wang. “The Chromosome‐level Genome of Female Ginseng ( Angelica Sinensis ) Provides Insights into Molecular Mechanisms and Evolution of Coumarin Biosynthesis.” The Plant Journal 112, no. 5 (December 2022): 1224–37. https://doi.org/10.1111/tpj.16007.

Harris, Nomi L., Karsten Hokamp, Hervé Ménager, Monica Munoz-Torres, Deepak Unni, Nicole Vasilevsky, and Jason Williams. “BOSC 2022: The First Hybrid and 23rd Annual Bioinformatics Open Source Conference.” F1000Research 11 (September 12, 2022): 1034. https://doi.org/10.12688/f1000research.125043.1.

Harrison, Kyle, Julien G. Levy, and Cecilia Tamborindeguy. “Effects of ‘Candidatus Liberibacter Solanacearum’ Haplotypes A and B on Tomato Gene Expression and Geotropism.” BMC Plant Biology 22, no. 1 (March 30, 2022): 156. https://doi.org/10.1186/s12870-022-03505-z.

Heilman, Kelly A., Michael C. Dietze, Alexis A. Arizpe, Jacob Aragon, Andrew Gray, John D. Shaw, Andrew O. Finley, Stefan Klesse, R. Justin DeRose, and Margaret E. K. Evans. “Ecological Forecasting of Tree Growth: Regional Fusion of Tree‐ring and Forest Inventory Data to Quantify Drivers and Characterize Uncertainty.” Global Change Biology, January 13, 2022, gcb.16038. https://doi.org/10.1111/gcb.16038.

Hofstatter, Paulo G., Gokilavani Thangavel, Thomas Lux, Pavel Neumann, Tihana Vondrak, Petr Novak, Meng Zhang, et al. “Repeat-Based Holocentromeres Influence Genome Architecture and Karyotype Evolution.” Cell 185, no. 17 (August 2022): 3153-3168.e18. https://doi.org/10.1016/j.cell.2022.06.045.

Hongfei Chen1*, Zheng Xiao1,2*, Baoqing Ding1,3, Pamela K. Diggle1, Yao-Wu Yuan. “Modular Regulation of Floral Traits by a PRE1 Homolog in Mimulus Verbenaceus: Implications for the Role of Pleiotropy in Floral Integration,” 2022. https://watermark.silverchair.com/uhac168.pdf?token=AQECAHi208BE49Ooan9kkhW_Ercy7Dm3ZL_9Cf3qfKAc485ysgAAAvEwggLtBgkqhkiG9w0BBwagggLeMIIC2gIBADCCAtMGCSqGSIb3DQEHATAeBglghkgBZQMEAS4wEQQM3hefEQE-VL9mmN1FAgEQgIICpBEkFtWm7wbAmcvbUAgSdrs2L3WEVjvAtC7cuRoCcrTYAdCDljUjZCMIBAASfm4jQKze44DAJGMWGPYN-WP7NdCaJlfOA5Qaulw5P9IOS77pKJlISgaAh-jarbPbYbNoDKTD-pVZ1FQSoQvBpKBtdjBZZuMLaYsYsAygAbX0jmeF1VL1saSFPYBm37tPs0mvnS0TqsVarabtPexzH3HnlpbmEWxBGEHRXXxFJpacpoWIBz95sgzXXHchGtLaeGhMoAwzgr51thR5jrRTW2AKcam-WO4rV9rIKRheb1Tcoht7UyUQsX1OVKQ7-awJkhw7pd3YHkrNFRgf7IttNzOR5Gof0kCDlVJ5aR2l0O73RNMn5ZcX_4yb4bv3_qchchdbRiQyDo70kkQkfLNTEoAaB2pyV97miPS2ncz12P2PoO_LPxvNAUAetu7hI5RW-hZp9Rz-yDg2Yw_Vah4GMcdpbcA_CzWSst1DP8yiE9MrcC959Bjw-AfiqG9x0vAjWx0Jh6-eDsNyPNKedQh2NRAZ7dgEOTlgtGXHiRnyKGvHqXi3Vj0lBiNLHFd1INzAgEVuy_Ju9tJAbwMXiGfIIfy-GwGObAN60FBjfhxtQfAkSEMbqo29oZNHUzObUFyLFOwvnPj8MZIokjcCLTyB3kDH4o8B523BF7TZyUbAXEEAjBDsNKpms9opnFwAwD5hNIc07isG76bqzXGyuprGahFgr-GbOCC3AhbHnTiEaIyLFuAfuD_uE_N-PtnijJRkk_YkDUbHW5RJLpLFVyWxdnG_xRaLigOIIiwRBSC7triYyZlcummzTMYDsyqcMDEGjTEGSlKumDKMdeQPIMtLy3WPxG4Bi3OmmVHdbYY1Qh_1qh9Mo3rDzPKrWHUkoA0Ia85HVwKXhAU.

Hossain, Chandrema, Victoria Hernandez, Luisa McHugh, Phu-Tri Tran, and Bruce Nash. “Analyzing the Impacts of Tobacco Mosaic Virus on the Microbial Diversity of Nicotiana Benthamiana.” Journal of Plant Pathology 104, no. 3 (April 30, 2022): 959–67. https://doi.org/10.1007/s42161-022-01103-4.

Howard-Varona, Cristina, Simon Roux, Benjamin P. Bowen, Leslie P. Silva, Rebecca Lau, Sarah M. Schwenck, Samuel Schwartz, et al. “Protist Impacts on Marine Cyanovirocell Metabolism.” ISME Communications 2, no. 1 (October 1, 2022): 94. https://doi.org/10.1038/s43705-022-00169-6.

Huang, Tianxiao, Yan Li, Wei Wang, Le Xu, Jingrui Li, and Yijun Qi. “Evolution of LmiRNAs and Their Targets from MITEs for Rice Adaptation.” Journal of Integrative Plant Biology 64, no. 12 (December 2022): 2411–24. https://doi.org/10.1111/jipb.13413.

Ishigaki, Kazuyoshi, Saori Sakaue, Chikashi Terao, Yang Luo, Kyuto Sonehara, Kensuke Yamaguchi, Tiffany Amariuta, et al. “Multi-Ancestry Genome-Wide Association Analyses Identify Novel Genetic Mechanisms in Rheumatoid Arthritis.” Nature Genetics 54, no. 11 (November 2022): 1640–51. https://doi.org/10.1038/s41588-022-01213-w.

Jhu, Min-Yao, Moran Farhi, Li Wang, Richard N Philbrook, Michael S Belcher, Hokuto Nakayama, Kristina S Zumstein, et al. “Heinz-Resistant Tomato Cultivars Exhibit a Lignin-Based Resistance to Field Dodder ( Cuscuta Campestris ) Parasitism.” Plant Physiology, January 31, 2022, kiac024. https://doi.org/10.1093/plphys/kiac024.

Jiang, Jing-Zhe, Wen-Guang Yuan, Jiayu Shang, Ying-Hui Shi, Li-Ling Yang, Min Liu, Peng Zhu, Tao Jin, Yanni Sun, and Li-Hong Yuan. “Virus Classification for Viral Genomic Fragments Using PhaGCN2.” Preprint. In Review, May 20, 2022. https://doi.org/10.21203/rs.3.rs-1658089/v1.

Joaquim, Pamela I. L., Mayla D. C. Molinari, Silvana R. R. Marin, Daniel A. Barbosa, Américo J. C. Viana, Elibio L. Rech, Fernando A. Henning, Alexandre L. Nepomuceno, and Liliane M. Mertz-Henning. “Nitrogen Compounds Transporters: Candidates to Increase the Protein Content in Soybean Seeds.” Journal of Plant Interactions 17, no. 1 (February 27, 2022): 309–18. https://doi.org/10.1080/17429145.2022.2039791.

Kavas, Musa, Karam Mostafa, Zafer Seçgin, Bayram Ali Yerlikaya, Kubilay Yıldırım, and Gökhan Gökdemir. “Genome-Wide Analysis of DUF221 Domain-Containing Gene Family in Common Bean and Identification of Its Role on Abiotic and Phytohormone Stress Response.” Genetic Resources and Crop Evolution, July 2, 2022. https://doi.org/10.1007/s10722-022-01421-7.

Keuler, Rachel, Jacob Jensen, Alejandrina Barcena-Peña, Felix Grewe, H. Thorsten Lumbsch, Jen-Pan Huang, and Steven D. Leavitt. “Interpreting Phylogenetic Conflict: Hybridization in the Most Speciose Genus of Lichen-Forming Fungi.” Molecular Phylogenetics and Evolution 174 (September 2022): 107543. https://doi.org/10.1016/j.ympev.2022.107543.

Kim, Kang Eun, Seung Won Jung, Joon Sang Park, Hyun-Jung Kim, Cholyoung Lee, Sun-Yong Ha, and Taek-Kyun Lee. “Optimized Metavirome Analysis of Marine DNA Virus Communities for Taxonomic Profiling.” Ocean Science Journal 57, no. 2 (June 2022): 259–68. https://doi.org/10.1007/s12601-022-00064-0.

Koontz, Michael J., Victoria M. Scholl, Anna I. Spiers, Megan E. Cattau, John Adler, Joseph McGlinchy, Tristan Goulden, Brett A. Melbourne, and Jennifer K. Balch. “Democratizing Macroecology: Integrating Unoccupied Aerial Systems with the National Ecological Observatory Network.” Ecosphere 13, no. 8 (August 2022). https://doi.org/10.1002/ecs2.4206.

Kühn, Nicola, Marcus P Spiegel, Carolina Tovar, Katherine J Willis, and Marc Macias-Fauria. “Seeing Roots from Space: Aboveground Fingerprints of Root Depth in Vegetation Sensitivity to Climate in Dry Biomes.” Environmental Research Letters 17, no. 11 (November 1, 2022): 114062. https://doi.org/10.1088/1748-9326/ac9d4f.

Kundu, Nidhi, Geeta Rani, Vijaypal Singh Dhaka, Kalpit Gupta, Siddaiah Chandra Nayaka, Eugenio Vocaturo, and Ester Zumpano. “Disease Detection, Severity Prediction, and Crop Loss Estimation in MaizeCrop Using Deep Learning.” Artificial Intelligence in Agriculture 6 (2022): 276–91. https://doi.org/10.1016/j.aiia.2022.11.002.

Labbé, Myriam, Mary Thaler, Thomas M. Pitot, Josephine Z. Rapp, Warwick F. Vincent, and Alexander I. Culley. “Climate-Endangered Arctic Epishelf Lake Harbors Viral Assemblages with Distinct Genetic Repertoires.” Edited by Nicole R. Buan. Applied and Environmental Microbiology 88, no. 17 (September 13, 2022): e00228-22. https://doi.org/10.1128/aem.00228-22.

Lamanchai, Kanyanat, Deborah L. Salmon, Nicholas Smirnoff, Pornsawan Sutthinon, Sittiruk Roytrakul, Kantinan Leetanasaksakul, Suthathip Kittisenachai, and Chatchawan Jantasuriyarat. “OsVTC1-1 RNAi Mutant with Reduction of Ascorbic Acid Synthesis Alters Cell Wall Sugar Composition and Cell Wall-Associated Proteins.” Agronomy 12, no. 6 (May 26, 2022): 1272. https://doi.org/10.3390/agronomy12061272.

Li, Fangping, Shilin Huang, Yu Mei, Bingqi Wu, Zhuangwei Hou, Penglin Zhan, Zhihao Hou, Wenjie Huang, Junliang Zhao, and Jihua Wang. “Genome Assembly Provided New Insights into the Cinnamomum Burmannii Evolution and D-Borneol Biosynthesis Differences between Chemotypes.” Industrial Crops and Products 186 (October 2022): 115181. https://doi.org/10.1016/j.indcrop.2022.115181.

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