2019 Publications

Anderson, S. L., Murray, S. C., Malambo, L., Ratcliff, C., Popescu, S., Cope, D., Chang, A., Jung, J., & Thomasson, J. A. (2019). Prediction of Maize Grain Yield before Maturity Using Improved Temporal Height Estimates of Unmanned Aerial Systems. Tppj, 2(1), 0. https://doi.org/10.2135/tppj2019.02.0004
Arias, J. D. (2019). Phylogenomic Framework of the Plant Family Acanthaceae [PhD Thesis]. http://ezproxy.library.arizona.edu/login?url=https://search.proquest.com/docview/2300141504?accountid=8360
Bainard, J. D., Newmaster, S. G., & Budke, J. M. (2019). Genome size and endopolyploidy evolution across the moss phylogeny. Annals of Botany, mcz194. https://doi.org/10.1093/aob/mcz194
Baller, J., Kono, T., Herman, A., & Zhang, Y. (2019). CHURP: A Lightweight CLI Framework to Enable Novice Users to Analyze Sequencing Datasets in Parallel. Proceedings of the Practice and Experience in Advanced Research Computing on Rise of the Machines (Learning)  - PEARC ’19, 1–5. https://doi.org/10.1145/3332186.3333156
Bao, Y., Zarecor, S., Shah, D., Tuel, T., Campbell, D. A., Chapman, A. V. E., Imberti, D., Kiekhaefer, D., Imberti, H., Lübberstedt, T., Yin, Y., Nettleton, D., Lawrence-Dill, C. J., Whitham, S. A., Tang, L., & Howell, S. H. (2019). Assessing plant performance in the Enviratron. Plant Methods, 15(1), 117. https://doi.org/10.1186/s13007-019-0504-y
Beedessee, G., Hisata, K., Roy, M. C., Van Dolah, F. M., Satoh, N., & Shoguchi, E. (2019). Diversified secondary metabolite biosynthesis gene repertoire revealed in symbiotic dinoflagellates. Scientific Reports, 9, 1204. https://doi.org/10.1038/s41598-018-37792-0
Bendele, K. G., Guerrero, F. D., Cameron, C., Bodine, D. M., & Miller, R. J. (2019). Gene expression during the early stages of host perception and attachment in adult female Rhipicephalus microplus ticks. Experimental and Applied Acarology, 79(1), 107–124. https://doi.org/10.1007/s10493-019-00420-1
Bertioli, D. J., Jenkins, J., Clevenger, J., Dudchenko, O., Gao, D., Seijo, G., Leal-Bertioli, S. C. M., Ren, L., Farmer, A. D., Pandey, M. K., Samoluk, S. S., Abernathy, B., Agarwal, G., Ballén-Taborda, C., Cameron, C., Campbell, J., Chavarro, C., Chitikineni, A., Chu, Y., … Schmutz, J. (2019). The genome sequence of segmental allotetraploid peanut Arachis hypogaea. Nature Genetics, 51, 877–884. https://doi.org/10.1038/s41588-019-0405-z
Bhat, N. N., Padder, B. A., Barthelson, R. A., & Andrabi, K. I. (2019). Compendium of Colletotrichum graminicola responsive infection-induced transcriptomic shifts in the maize. Plant Gene, 17, 100166. https://doi.org/10.1016/j.plgene.2018.11.001
Bin Jang, H., Bolduc, B., Zablocki, O., Kuhn, J. H., Roux, S., Adriaenssens, E. M., Brister, J. R., Kropinski, A. M., Krupovic, M., Lavigne, R., Turner, D., & Sullivan, M. B. (2019). Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks. Nature Biotechnology, 37, 632–639. https://doi.org/10.1038/s41587-019-0100-8
Bischoff, V., Bunk, B., Meier-Kolthoff, J. P., Spröer, C., Poehlein, A., Dogs, M., Nguyen, M., Petersen, J., Daniel, R., Overmann, J., Göker, M., Simon, M., Brinkhoff, T., & Moraru, C. (2019). Cobaviruses – a new globally distributed phage group infecting Rhodobacteraceae in marine ecosystems. ISME Journal, 13, 1404–1421. https://doi.org/10.1038/s41396-019-0362-7
Bokros, N., Popescu, S. C., & Popescu, G. V. (2019). Multispecies genome-wide analysis defines the MAP3K gene family in Gossypium hirsutum and reveals conserved family expansions. BMC Bioinformatics, 20, 99. https://doi.org/10.1186/s12859-019-2624-9
Bolger, A. M., Poorter, H., Dumschott, K., Bolger, M. E., Arend, D., Osorio, S., Gundlach, H., Mayer, K. F. X., Lange, M., Scholz, U., & Usadel, B. (2019). Computational aspects underlying genome to phenome analysis in plants. Plant Journal, 97, 182–198. https://doi.org/10.1111/tpj.14179
Brahmstedt, E. S., Zhou, H., Eggleston, E. M., Holsen, T. M., & Twiss, M. R. (2019). Assessment of mercury mobilization potential in Upper St. Lawrence River riparian wetlands under new water level regulation management. Journal of Great Lakes Research. https://doi.org/10.1016/j.jglr.2019.03.001
Brenskelle, L., Stucky, B. J., Deck, J., Walls, R., & Guralnick, R. P. (2019). Integrating herbarium specimen observations into global phenology data systems. Applications in Plant Sciences, 7, e01231. https://doi.org/10.1002/aps3.1231
Bruno-barcena, J. M., Sandoval Espinola, W., & Chinn, M. S. (2019). Systems and Methods of Carbon Fixation Using Solventogenic Clostridium Beijerinckii (USPTO Patent No. 20190211302). http://www.freepatentsonline.com/y2019/0211302.html
Buoso, S., Pagliari, L., Musetti, R., Martini, M., Marroni, F., Schmidt, W., & Santi, S. (2019). ‘Candidatus Phytoplasma solani’ interferes with the distribution and uptake of iron in tomato. BMC Genomics, 20(1), 703. https://doi.org/10.1186/s12864-019-6062-x
Busatto, N., Farneti, B., Tadiello, A., Oberkofler, V., Cellini, A., Biasioli, F., Delledonne, M., Cestaro, A., Noutsos, C., & Costa, F. (2019). Wide transcriptional investigation unravel novel insights of the on-tree maturation and postharvest ripening of ‘Abate Fetel’ pear fruit. Horticulture Research, 6, 32. https://doi.org/10.1038/s41438-018-0115-1
Cai, H., Zhang, M., Liu, Y., He, Q., Chai, M., Liu, L., Chen, F., Huang, Y., Yan, M., Zhao, H., Hu, J., & Qin, Y. (2019). Genome-Wide Classification and Evolutionary and Functional Analyses of the VQ Family. Tropical Plant Biology, 12, 117–131. https://doi.org/10.1007/s12042-019-09224-4
Calegari, P., Levrier, M., & Balczyński, P. (2019). Web Portals for High-performance Computing. ACM Transactions on the Web, 13, 1–36. https://doi.org/10.1145/3197385
Calkins, T. L., Tamborindeguy, C., & Pietrantonio, P. V. (2019). GPCR annotation, G proteins, and transcriptomics of fire ant (Solenopsis invicta) queen and worker brain: An improved view of signaling in an invasive superorganism. General and Comparative Endocrinology, 278, 89–103. https://doi.org/10.1016/j.ygcen.2018.12.008
Carpenter, E. J., Matasci, N., Ayyampalayam, S., Wu, S., Sun, J., Yu, J., Jimenez Vieira, F. R., Bowler, C., Dorrell, R. G., Gitzendanner, M. A., Li, L., Du, W., K. Ullrich, K., Wickett, N. J., Barkmann, T. J., Barker, M. S., Leebens-Mack, J. H., & Wong, G. K.-S. (2019). Access to RNA-sequencing data from 1,173 plant species: The 1000 Plant transcriptomes initiative (1KP). GigaScience, 8(10), giz126. https://doi.org/10.1093/gigascience/giz126
Castillo, A. I., Nelson, A. D. L., & Lyons, E. (2019). Tail wags the dog? Functional gene classes driving genome-wide GC content in Plasmodium spp. Genome Biology and Evolution, 11, 497–507. https://doi.org/10.1093/gbe/evz015
Castillo, Y. M., Mangot, J., Benites, L. F., Logares, R., Kuronishi, M., Ogata, H., Jaillon, O., Massana, R., Sebastián, M., & Vaqué, D. (2019). Assessing the viral content of uncultured picoeukaryotes in the global‐ocean by single cell genomics. Molecular Ecology, 28(18), 4272–4289. https://doi.org/10.1111/mec.15210
Chambers, A. H. (2019). Vanilla (Vanilla spp.) Breeding. In J. M. Al-Khayri, S. M. Jain, & D. V. Johnson (Eds.), Advances in Plant Breeding Strategies: Industrial and Food Crops (pp. 707–734). Springer International Publishing. https://doi.org/10.1007/978-3-030-23265-8_18
Chiovitti, A., Thorpe, F., Gorman, C., Cuxson, J. L., Robevska, G., Szwed, C., Duncan, J. C., Vanyai, H. K., Cross, J., Siemering, K. R., & Sumner, J. (2019). A citizen science model for implementing statewide educational DNA barcoding. PLoS ONE, 14, e0208604. https://doi.org/10.1371/journal.pone.0208604
Choi, H. K. (2019). Translational genomics and multi-omics integrated approaches as a useful strategy for crop breeding. Genes and Genomics, 41, 133–146. https://doi.org/10.1007/s13258-018-0751-8
Choi, W. G., Barker, R. J., Kim, S. H., Swanson, S. J., & Gilroy, S. (2019). Variation in the transcriptome of different ecotypes of Arabidopsis thaliana reveals signatures of oxidative stress in plant responses to spaceflight. American Journal of Botany, 106, 123–136. https://doi.org/10.1002/ajb2.1223
Cleveland, S. B., McLean, J. H., Rotzoll, K., Izuka, S. K., & Jacobs, G. A. (2019). Enabling Real-Time User Interaction For Decision Support: Experiences Extending A Local Agave Platform Metadata Service. Proceedings of the Practice and Experience in Advanced Research Computing on Rise of the Machines (Learning)  - PEARC ’19, 1–6. https://doi.org/10.1145/3332186.3332252
Cohen, J. I. (2019). The conservation genomics of the endangered distylous gypsophile Oreocarya crassipes (Boraginaceae). Conservation Genetics, 20(6), 1315–1328. https://doi.org/10.1007/s10592-019-01212-1
Coley, P. D., Endara, M. J., Ghabash, G., Kidner, C. A., Nicholls, J. A., Pennington, R. T., Mills, A. G., Soule, A. J., Lemes, M. R., Stone, G. N., & Kursar, T. A. (2019). Macroevolutionary patterns in overexpression of tyrosine: An anti-herbivore defence in a speciose tropical tree genus, Inga (Fabaceae). Journal of Ecology, 107, 1620–1632. https://doi.org/10.1111/1365-2745.13208
Colle, M., Leisner, C. P., Wai, C. M., Ou, S., Bird, K. A., Wang, J., Wisecaver, J. H., Yocca, A. E., Alger, E. I., Tang, H., Xiong, Z., Callow, P., Ben-Zvi, G., Brodt, A., Baruch, K., Swale, T., Shiue, L., Song, G. Q., Childs, K. L., … Edger, P. P. (2019). Haplotype-phased genome and evolution of phytonutrient pathways of tetraploid blueberry. GigaScience, 8. https://doi.org/10.1093/gigascience/giz012
Crimmins, M. A., & Crimmins, T. M. (2019). Does an Early Spring Indicate an Early Summer? Relationships Between Intraseasonal Growing Degree Day Thresholds. Journal of Geophysical Research: Biogeosciences, 124(8), 2628–2641. https://doi.org/10.1029/2019JG005297
Crimmins, T. M., & Crimmins, M. A. (2019). Biologically‐Relevant Trends in Springtime Temperatures Across the United States. Geophysical Research Letters, 46(21), 12377–12387. https://doi.org/10.1029/2019GL085251
Cullis, C. A., & Cullis, M. A. (2019). Flax Genome “Edits” in Response to the Growth Environment. In C. A. Cullis (Ed.), Genetics and Genomics of Linum (Vol. 23, pp. 235–248). Springer International Publishing. https://doi.org/10.1007/978-3-030-23964-0_15
Daly, R. A., Roux, S., Borton, M. A., Morgan, D. M., Johnston, M. D., Booker, A. E., Hoyt, D. W., Meulia, T., Wolfe, R. A., Hanson, A. J., Mouser, P. J., Moore, J. D., Wunch, K., Sullivan, M. B., Wrighton, K. C., & Wilkins, M. J. (2019). Viruses control dominant bacteria colonizing the terrestrial deep biosphere after hydraulic fracturing. Nature Microbiology, 4, 352–361. https://doi.org/10.1038/s41564-018-0312-6
Danczak, R. E., Johnston, M. D., Kenah, C., Slattery, M., & Wilkins, M. J. (2019). Capability for arsenic mobilization in groundwater is distributed across broad phylogenetic lineages. PLOS ONE, 14(9), e0221694. https://doi.org/10.1371/journal.pone.0221694
Common Bean Genetics, Breeding, and Genomics for Adaptation to Changing to New Agri-environmental Conditions, Genomic Designing of Climate-Smart Pulse Crops 1 (Springer International Publishing 2019).
de Sousa, F., Foster, P. G., Donoghue, P. C. J., Schneider, H., & Cox, C. J. (2019). Nuclear protein phylogenies support the monophyly of the three bryophyte groups (Bryophyta Schimp.). New Phytologist, 222, 565–575. https://doi.org/10.1111/nph.15587
De Vila, M. H., Attar, R., Pereanez, M., & Frangi, A. F. (2019). MULTI-X, a State-of-the-Art Cloud-Based Ecosystem for Biomedical Research. IEEE.
Deaton, J., Yu, F. B., & Quake, S. R. (2019). Mini‐Metagenomics and Nucleotide Composition Aid the Identification and Host Association of Novel Bacteriophage Sequences. Advanced Biosystems, 3(11), 1900108. https://doi.org/10.1002/adbi.201900108
Debeljak, P., Toulza, E., Beier, S., Blain, S., & Obernosterer, I. (2019). Microbial iron metabolism as revealed by gene expression profiles in contrasted Southern Ocean regimes. Environmental Microbiology, 21, 1462-2920.14621. https://doi.org/10.1111/1462-2920.14621
Deelman, E., Vahi, K., Rynge, M., Mayani, R., Da Silva, R. F., Papadimitriou, G., & Livny, M. (2019). The Evolution of the Pegasus Workflow Management Software. Computing in Science and Engineering, 21, 22–36. https://doi.org/10.1109/MCSE.2019.2919690
Dobrin, B. (2019). Aspects of Phylogenetic Inference: Missing Data and Rate Variation.
Duong, D. A., Espinosa-Artiles, P., Orozco, R. A., Molnár, I., & Stock, S. P. (2019). Draft Genome Assembly of the Entomopathogenic Bacterium Photorhabdus luminescens subsp. Sonorensis Caborca. Microbiology Resource Announcements, 8(36), e00692-19, /mra/8/36/MRA.00692-19.atom. https://doi.org/10.1128/MRA.00692-19
Edger, P. P., Poorten, T. J., VanBuren, R., Hardigan, M. A., Colle, M., McKain, M. R., Smith, R. D., Teresi, S. J., Nelson, A. D. L., Wai, C. M., Alger, E. I., Bird, K. A., Yocca, A. E., Pumplin, N., Ou, S., Ben-Zvi, G., Brodt, A., Baruch, K., Swale, T., … Knapp, S. J. (2019). Origin and evolution of the octoploid strawberry genome. Nature Genetics, 51, 541–547. https://doi.org/10.1038/s41588-019-0356-4
Esteva, M., Walls, R. L., Magill, A. B., Xu, W., Huang, R., Carson, J., & Song, J. (2019). Identifier Services: Modeling and Implementing Distributed Data Management in Cyberinfrastructure. Data and Information Management, 3.
Feng, Z., Hou, J., Yu, Y., Wu, W., Deng, Y., Wang, X., Zhi, H., Zhang, L., Wu, W., & Guo, D. (2019). Dissecting the Metabolic Phenotype of the Antihypertensive Effects of Five Uncaria Species on Spontaneously Hypertensive Rats. Frontiers in Pharmacology, 10, 845. https://doi.org/10.3389/fphar.2019.00845
Fernandez-Perez, A., Sathe, A. A., Bhakta, M., Leggett, K., Xing, C., & Munshi, N. V. (2019). Hand2 Selectively Reorganizes Chromatin Accessibility to Induce Pacemaker-like Transcriptional Reprogramming. Cell Reports, 27, 2354-2369.e7. https://doi.org/10.1016/j.celrep.2019.04.077
Ferreira da Silva, R., Orgerie, A. C., Casanova, H., Tanaka, R., Deelman, E., & Suter, F. (2019). Accurately Simulating Energy Consumption of I/O-Intensive Scientific Workflows: Vol. 11536 LNCS. Springer, Cham.
Furler, R. L., Ali, A., Yang, O. O., & Nixon, D. F. (2019). Nef-induced differential gene expression in primary CD4+ T cells following infection with HIV-1 isolates. Virus Genes, 55, 541–544. https://doi.org/10.1007/s11262-019-01670-2
Next-Generation Sequencing Enabled Genetics in Hexaploid Wheat, Applications of Genetic and Genomic Research in Cereals 49 (Woodhead Publishing 2019).
Gesing, S., Dahan, M., Zentner, M., Wilkins-Diehr, N., & Lawrence, K. (2019). The Science Gateways Community Institute: Collaborations and efforts on international scale. Future Generation Computer Systems, 101, 951–958. https://doi.org/10.1016/j.future.2019.07.024
Ghaffar, M., Schüler, D., König, P., Arend, D., Junker, A., Scholz, U., & Lange, M. (2019). Programmatic Access to FAIRified Digital Plant Genetic Resources. Journal of Integrative Bioinformatics, 16(4). https://doi.org/10.1515/jib-2019-0060
Gill, A., Blackburn, L., Roshanineshat, A., Chan, C.-K., Doeleman, S. S., Johnson, M. D., Raymond, A. W., & Weintroub, J. (2019). Prospects for Wideband VLBI Correlation in the Cloud. Publications of the Astronomical Society of the Pacific, 131(1006), 124501. https://doi.org/10.1088/1538-3873/ab32a8
Gillan, J. K. (2019). Rangeland Inventory and Monitoring with Unmanned Aerial System Imagery.
Gillan, J. K., McClaran, M. P., Swetnam, T. L., & Heilman, P. (2019). Estimating forage utilization with drone-based photogrammetric point clouds. Rangeland Ecology and Management, 72, 575–585. https://doi.org/10.1016/j.rama.2019.02.009
Groom, Q., Desmet, P., Reyserhove, L., Adriaens, T., Oldoni, D., Vanderhoeven, S., Baskauf, S. J., Chapman, A., McGeoch, M., Walls, R., & others. (2019). Improving Darwin Core for research and management of alien species. Biodiversity Information Science and Standards, 3, e38084.
Gruenstaeudl, M., & Hartmaring, Y. (2019). EMBL2Checklists: A Python package to facilitate the user-friendly submission of plant and fungal DNA barcoding sequences to ENA. PLoS ONE, 14, e0210347. https://doi.org/10.1371/journal.pone.0210347
Hendre, P. S., Muthemba, S., Kariba, R., Muchugi, A., Fu, Y., Chang, Y., Song, B., Liu, H., Liu, M., Liao, X., Sahu, S. K., Wang, S., Li, L., Lu, H., Peng, S., Cheng, S., Xu, X., Yang, H., Wang, J., … Jamnadass, R. (2019). African Orphan Crops Consortium (AOCC): Status of developing genomic resources for African orphan crops. Planta, 1–15. https://doi.org/10.1007/s00425-019-03156-9
Hollebecq, J.-E., Bosquet, L. C., David, R., Quidoz, M.-C., Tardieu, F., Tireau, A., & Neveu, P. (2019). Identification of objects with Uniform Resource Identifier (URI): Recommendations for application in plant phenotyping.
Horvath, D. P., Clay, S. A., Bruggeman, S. A., Anderson, J. V., Chao, W. S., & Yeater, K. (2019). Varying Weed Densities Alter the Corn Transcriptome, Highlighting a Core Set of Weed-Induced Genes and Processes with Potential for Manipulating Weed Tolerance. The Plant Genome, 12(3).
Huang, Y., Zhou, N., Yang, M., Shen, Y., & Zhang, D. (2019). A comparative study of the population genetics of wild and cultivated populations of Paris polyphylla var. Yunnanensis based on amplified fragment length polymorphism markers. Ecology and Evolution, 9(18), 10707–10722. https://doi.org/10.1002/ece3.5589
Hudson, K. M., Belcher, S. M., & Cowley, M. (2019). Maternal cadmium exposure in the mouse leads to increased heart weight at birth and programs susceptibility to hypertension in adulthood. Scientific Reports, 9(1), 13553. https://doi.org/10.1038/s41598-019-49807-5
Initiative, O. T. P. T., & others. (2019). One thousand plant transcriptomes and the phylogenomics of green plants. Nature, 574(7780), 679.
Jantzen, J. R., Whitten, W. M., Neubig, K. M., Majure, L. C., Soltis, D. E., & Soltis, P. S. (2019). Effects of taxon sampling and tree reconstruction methods on phylodiversity metrics. Ecology and Evolution, 9(17), 9479–9499. https://doi.org/10.1002/ece3.5425
Kalidindi, S. R., Khosravani, A., Yucel, B., Shanker, A., & Blekh, A. L. (2019). Data Infrastructure Elements in Support of Accelerated Materials Innovation: ELA, PyMKS, and MATIN. Integrating Materials and Manufacturing Innovation, 8(4), 441–454. https://doi.org/10.1007/s40192-019-00156-1
Telephone Interviewing as a Qualitative Methodology for Researching Cyberinfrastructure and Virtual Organizations, Second International Handbook of Internet Research 1 (Springer Netherlands 2019).
Kengkanna, J., Jakaew, P., Amawan, S., Busener, N., Bucksch, A., & Saengwilai, P. (2019). Phenotypic variation of cassava root traits and their responses to drought. Applications in Plant Sciences, 7, e01238. https://doi.org/10.1002/aps3.1238
Kong, H. G., Kim, H. H., Chung, J. hui, Jun, J. H., Lee, S., Kim, H. M., Jeon, S., Park, S. G., Bhak, J., & Ryu, C. M. (2019). The Galleria mellonella Hologenome Supports Microbiota-Independent Metabolism of Long-Chain Hydrocarbon Beeswax. Cell Reports, 26, 2451-2464.e5. https://doi.org/10.1016/j.celrep.2019.02.018
Koutouleas, A., Jørgen Lyngs Jørgensen, H., Jensen, B., Lillesø, J. B., Junge, A., & Ræbild, A. (2019). On the hunt for the alternate host of Hemileia vastatrix. Ecology and Evolution, 9(23), 13619–13631. https://doi.org/10.1002/ece3.5755
LeFebvre, M. J., Brenskelle, L., Wieczorek, J., Kansa, S. W., Kansa, E. C., Wallis, N. J., King, J. N., Emery, K. F., & Guralnick, R. (2019). ZooarchNet: Connecting zooarchaeological specimens to the biodiversity and archaeology data networks. PLoS ONE, 14, e0215369. https://doi.org/10.1371/journal.pone.0215369
Leung, B., Hudgins, E. J., Potapova, A., & Ruiz-Jaen, M. C. (2019). A new baseline for countrywide α-diversity and species distributions: Illustration using >6,000 plant species in Panama. Ecological Applications, 29, e01866. https://doi.org/10.1002/eap.1866
Ley-lópez, J. M., Ley-lópez, J. M., González, J., Hanson, P. E., Académico, D., Biológica, R., Sarapiquí, T., & Rica, C. (2019). Plants and gall hosts of the Tirimbina Biological Reserve , Sarapiqui , Costa Rica: Combining field sampling with herbarium records Plants and gall hosts of the Tirimbina Biological Reserve , Sarapiqui , Costa Rica: Combining field sampling with herbari. Revista de Biología Tropical, 67, S212–S227. https://doi.org/10.15517/RBT.V67I2 SUPL.37233
Li, F.-W., & Mathews, S. (2019). Phylogenetic Methods to Study Light Signaling. In A. Hiltbrunner (Ed.), Phytochromes (Vol. 2026, pp. 265–276). Springer New York. https://doi.org/10.1007/978-1-4939-9612-4_21
Lien, M. R., Barker, R. J., Ye, Z., Westphall, M. H., Gao, R., Singh, A., Gilroy, S., & Townsend, P. A. (2019). A low-cost and open-source platform for automated imaging. Plant Methods, 15, 6. https://doi.org/10.1186/s13007-019-0392-1
Liu, Y., Sargent, L., Leung, W., Elgin, S. C. R., & Goecks, J. (2019). G-OnRamp: A Galaxy-based platform for collaborative annotation of eukaryotic genomes. Bioinformatics. https://doi.org/10.1093/bioinformatics/btz309
Liu, Z. Y.-C., Moxley, J. H., Kanive, P., Gleiss, A. C., Maughan, T., Bird, L., Jewell, O. J. D., Chapple, T. K., Gagne, T., White, C. F., & Jorgensen, S. J. (2019). Deep learning accurately predicts white shark locomotor activity from depth data. Animal Biotelemetry, 7(1), 14. https://doi.org/10.1186/s40317-019-0175-5
Ljungberg, M. C., Sadi, M., Wang, Y., Aronow, B. J., Xu, Y., Kao, R. J., Liu, Y., Gaddis, N., Ardini-Poleske, M. E., Umrod, T., Ambalavanan, N., Nicola, T., Kaminski, N., Ahangari, F., Sontag, R., Corley, R. A., Ansong, C., & Carson, J. P. (2019). Spatial distribution of marker gene activity in the mouse lung during alveolarization. Data in Brief, 22, 365–372. https://doi.org/10.1016/j.dib.2018.10.150
Luis, J. M. S. (2019). Sexual Reproduction and Enhancing the Efficacy of Biocontrol of Aflatoxin Contamination by 0RW1S34RfeSDcfkexd09rT2Aspergillus flavus1RW1S34RfeSDcfkexd09rT2 [PhD Thesis]. http://ezproxy.library.arizona.edu/login?url=https://search.proquest.com/docview/2315116240?accountid=8360
Lunde, C., Kimberlin, A., Leiboff, S., Koo, A. J., & Hake, S. (2019). Tasselseed5 overexpresses a wound-inducible enzyme, ZmCYP94B1, that affects jasmonate catabolism, sex determination, and plant architecture in maize. Communications Biology, 2, 114. https://doi.org/10.1038/s42003-019-0354-1
Macías-Duarte, A., Conway, C. J., Holroyd, G. L., Valdez-Gómez, H. E., & Culver, M. (2019). Genetic Variation among Island and Continental Populations of Burrowing Owl (Athene cunicularia) Subspecies in North America. Journal of Raptor Research, 53, 127. https://doi.org/10.3356/jrr-18-00002
Mahalingam, R. (2019). Analysis of the Barley Malt Rootlet Proteome. International Journal of Molecular Sciences, 21(1), 179. https://doi.org/10.3390/ijms21010179
Malanson, G. P., Virtanen, R., Britton, A. J., Jiménez-Alfaro, B., Qian, H., Petraglia, A., Tomaselli, M., Cooper, D., Damm, C., Pemble, R. H., & Brett, R. B. (2019). Hemispheric and Continental Scale Patterns of Similarity in Mountain Tundra [Preprint]. https://doi.org/10.17077/u06a-840z
Martinez, D. (2019). Identifying chromosomal regions associated with glucocorticoid-regulated gene transcription [PhD Thesis]. UCSF.
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