2018 Publications

Afgan, N., Enis; Lonie, Andrew; Taylor, James; Goonasekera. (2018). CloudLaunch: Discover and Deploy Cloud Applications. http://arxiv.org/abs/1805.04005

Ahmed, H., Md Bulbul; Santos, Karen Cristine Gonçalves dos; Sanchez, Ingrid Benerice; Petre, Benjamin; Lorrain, Cécile; Plourde, Mélodie B. ;. Duplessis, Sébastien; Desgagné-Penix, Isabel; Germain. (2018). A rust fungal effector binds plant DNA and modulates transcription. 8(1), 14718. https://doi.org/10.1038/s41598-018-32825-0

AlKhalifah, C. J., Naser; Campbell, Darwin A. ;. Falcon, Celeste M. ;. Gardiner, Jack M. ;. Miller, Nathan D. ;. Romay, Maria Cinta; Walls, Ramona; Walton, Renee; Yeh, Cheng-Ting; Bohn, Martin; Bubert, Jessica; Buckler, Edward S. ;. Ciampitti, Ignacio; Flint-Garcia, Sherry; Gore, Michael A. ;. Graham, Christopher; Hirsch, Candice; Holland, James B. ;. Hooker, David; Kaeppler, Shawn; Knoll, Joseph; Lauter, Nick; Lee, Elizabeth C. ;. Lorenz, Aaron; Lynch, Jonathan P. ;. Moose, Stephen P. ;. Murray, Seth C. ;. Nelson, Rebecca; Rocheford, Torbert; Rodriguez, Oscar; Schnable, James C. ;. Scully, Brian; Smith, Margaret; Springer, Nathan; Thomison, Peter; Tuinstra, Mitchell; Wisser, Randall J. ;. Xu, Wenwei; Ertl, David; Schnable, Patrick S. ;. De Leon, Natalia; Spalding, Edgar P. ;. Edwards, Jode; Lawrence-Dill. (2018). Maize Genomes to Fields: 2014 and 2015 field season genotype, phenotype, environment, and inbred ear image datasets. 11(1), 452. https://doi.org/10.1186/s13104-018-3508-1

Antequera, T., Ronny Bazan; Calyam, Prasad; Debroy, Saptarshi; Cui, Longhai; Seetharam, Sripriya; Dickinson, Matthew; Joshi, Trupti; Xu, Dong; Beyene. (2018). ADON: Application-Driven Overlay Network-as-a-Service for Data-Intensive Science. 6(3), 640–655. https://doi.org/10.1109/TCC.2015.2511753

Atallah, J. A., Nadia M. ;. Vitek, Olga; Gaiti, Federico; Tanurdzic, Milos; Banks. (2018). Sex Determination in Ceratopteris richardii Is Accompanied by Transcriptome Changes That Drive Epigenetic Reprogramming of the Young Gametophyte. 8(7), 2205–2214. https://doi.org/10.1534/g3.118.200292

Ayella, M. R., Allan; Beck. (2018). A course-based undergraduate research experience investigating the consequences of nonconserved mutations in lactate dehydrogenase: CURE Investigating the Consequences of Non-conserved Mutations in LDH. 46(3), 285–296. https://doi.org/10.1002/bmb.21115

Bagley, J. C., Heming, N. M., Gutiérrez, E. E., Devisetty, U. K., Mock, K. E., Eckert, A. J., & Strauss, S. H. (2018). Genotyping-by-sequencing and ecological niche modeling illuminate phylogeography, admixture, and Pleistocene range dynamics in quaking aspen (Populus tremuloides). https://doi.org/10.7287/peerj.preprints.27162v1

Bagley, S. H., Justin C; Heming, Neander M; Gutiérrez, Eliécer E; Devisetty, Upendra K; Mock, Karen E; Eckert, Andrew J; Strauss. (2018). Genotyping-by-sequencing and ecological niche modeling illuminate phylogeography, admixture, and Pleistocene range dynamics in quaking aspen ( Populus tremuloides ). https://peerj.com/preprints/27162

Baker, S. S. (2018). Using DNA Barcoding To Identify Duckweed Species as Part of an Undergraduate Ecology Course (M. A. Roberts-Kirchhoff Elizabeth S. ;. Benvenuto, Ed.; Vol. 1276, pp. 67–79). https://pubs.acs.org/doi/abs/10.1021/bk-2018-1276.ch005

Beardsley, J. M., Timothy M; Gropp, Robert E; Verdier. (2018). Addressing Biological Informatics Workforce Needs: A Report from the AIBS Council. https://doi.org/10.1093/biosci/biy116

Beckman, R., Noelle G. ;. Bullock, James M. ;. Salguero-Gómez. (2018). High dispersal ability is related to fast life-history strategies. 106(4), 1349–1362. https://doi.org/10.1111/1365-2745.12989

Bertolini, E., Edoardo; Pè, Mario Enrico; Mica. (2018). Transcriptional and Posttranscriptional Regulation of Drought Stress Treatments in Brachypodium Leaves (P. J. Sablok Gaurav; Budak, Hikmet; Ralph, Ed.; Vol. 1667, pp. 21–29). http://link.springer.com/10.1007/978-1-4939-7278-4_2

Boggess, E. E. (2018). Methods for analysis of derivative strains from metabolic evolution experiments [PhD Thesis]. Iowa State University.

Borton, J. M. others, Mikayla A; Hoyt, David W; Roux, Simon; Daly, Rebecca A; Welch, Susan A; Nicora, Carrie D; Purvine, Samuel; Eder, Elizabeth K; Hanson, Andrea J; Sheets. (2018). Coupled laboratory and field investigations resolve microbial interactions that underpin persistence in hydraulically fractured shales. 115(28), E6585–E6594.

Breen, B., Joe; McKee, Shawn; Riedel, Benedikt; Stidd, Jason; Truong, Luan; Vukotic, Ilija; Bryant, Lincoln; Carcassi, Gabriele; Chen, Jiahui; Gardner, Robert W. ;. Harden, Ryan; Izdimirski, Martin; Killen, Robert; Kulbertis. (2018). Building the SLATE Platform. 7-Jan. https://doi.org/10.1145/3219104.3219144

Brown, S. B., Anne V. ;. Campbell, Jacqueline D. ;. Assefa, Teshale; Grant, David; Nelson, Rex T. ;. Weeks, Nathan T. ;. Cannon. (2018). Ten quick tips for sharing open genomic data. 14(12), e1006472. https://doi.org/10.1371/journal.pcbi.1006472

Bruno-Barcena, J. M., ESPINOSA, W. J. S., & Chinn, M. S. (2018). Systems and methods of carbon fixation using solventogenic clostridium beijerinckii. Google Patents.

Budnick, C. C., James A. ;. Sheehan, Lauren M. ;. Kang, Lin; Michalak, Pawel; Caswell. (2018). Characterization of Three Small Proteins in Brucella abortus Linked to Fucose Utilization. 200(18), e00127-18, /jb/200/18/e00127-18.atom. https://doi.org/10.1128/JB.00127-18

Calkins, P. V., Travis L. ;. Chen, Mei-Er; Arora, Arinder K. ;. Hawkings, Chloe; Tamborindeguy, Cecilia; Pietrantonio. (2018). Brain gene expression analyses in virgin and mated queens of fire ants reveal mating-independent and socially regulated changes. 8(8), 4312–4327. https://doi.org/10.1002/ece3.3976

Chapa, M. X. (2018). A Cyberinfrastructure Plat Form for the Modeling and Optimization of Biomass Logistics [PhD Thesis, The University of Texas at San Antonio]. https://search.proquest.com/docview/2158375281?pq-origsite=gscholar

Chougule, D., Kapeel M. ;. Wang, Liya; Stein, Joshua C. ;. Wang, Xiaofei; Devisetty, Upendra Kumar; Klein, Robert R. ;. Ware. (2018). Improved RNA-seq Workflows Using CyVerse Cyberinfrastructure. 63(1), e53. https://doi.org/10.1002/cpbi.53

Cleveland, G. A., Sean B. ;. Dooley, Rion; Perry, David; Stubbs, Joe; Fonner, John M. ;. Jacobs. (2018). Building Science Gateway Infrastructure in the Middle of the Pacific and Beyond: Experiences using the Agave Deployer and Agave Platform to Build Science Gateways. 8-Jan. https://doi.org/10.1145/3219104.3219151

Concia, L., Lorenzo; Brooks, Ashley M. ;. Wheeler, Emily; Zynda, Gregory J. ;. Wear, Emily E. ;. LeBlanc, Chantal; Song, Jawon; Lee, Tae-Jin; Pascuzzi, Pete E. ;. Martienssen, Robert A. ;. Vaughn, Matthew W. ;. Thompson, William F. ;. Hanley-Bowdoin. (2018). Genome-Wide Analysis of the Arabidopsis Replication Timing Program. 176(3), 2166–2185. https://doi.org/10.1104/pp.17.01537

Cooper, P., Laurel; Meier, Austin; Laporte, Marie-Angélique; Elser, Justin L; Mungall, Chris; Sinn, Brandon T; Cavaliere, Dario; Carbon, Seth; Dunn, Nathan A; Smith, Barry; Qu, Botong; Preece, Justin; Zhang, Eugene; Todorovic, Sinisa; Gkoutos, Georgios; Doonan, John H; Stevenson, Dennis W; Arnaud, Elizabeth; Jaiswal. (2018). The Planteome database: An integrated resource for reference ontologies, plant genomics and phenomics. 46(D1), D1168–D1180. https://doi.org/10.1093/nar/gkx1152

Corrie, F., Brian D. ;. Marthandan, Nishanth; Zimonja, Bojan; Jaglale, Jerome; Zhou, Yang; Barr, Emily; Knoetze, Nicole; Breden, Frances M. W. ;. Christley, Scott; Scott, Jamie K. ;. Cowell, Lindsay G. ;. Breden. (2018). iReceptor: A platform for querying and analyzing antibody/B-cell and T-cell receptor repertoire data across federated repositories. 284(1), 24–41. https://doi.org/10.1111/imr.12666

Cox, R., Simon J. D; Lehnert, Kerstin; Klump, Jens; Wyborn, Lesley; Walls. (2018). Specimen Identifiers in Related Disciplines: What can Biodiversity Learn from and Offer to Other Fields? 2, e26615. https://doi.org/10.3897/biss.2.26615

Dalcin Martins, M. J., Paula; Danczak, Robert E. ;. Roux, Simon; Frank, Jeroen; Borton, Mikayla A. ;. Wolfe, Richard A. ;. Burris, Marie N. ;. Wilkins. (2018). Viral and metabolic controls on high rates of microbial sulfur and carbon cycling in wetland ecosystems. 6(1), 138. https://doi.org/10.1186/s40168-018-0522-4

Das, D. L., Sunetra; Vraspir, Lindsay; Zhou, Wen; Durica, David S. ;. Mykles. (2018). Transcriptomic analysis of differentially expressed genes in the molting gland (Y-organ) of the blackback land crab, Gecarcinus lateralis, during molt-cycle stage transitions. 28, 37–53. https://doi.org/10.1016/j.cbd.2018.06.001

Davies, N., Deck, J., Ram, K., Walls, R., & Williams, R. (2018). Blockchain-enabled Data Trusts for Futuromics Research. American Geophysical Union, Fall Meeting 2018, Abstract #IN53A-08. http://adsabs.harvard.edu/abs/2018AGUFMIN53A..08D

Davies, R., , Neil, John Deck, Karthik Ram, Ramona Walls; Williams. (2018). Blockchain-enabled Data Trusts for Futuromics Research. IN53A-08. http://adsabs.harvard.edu/abs/2018AGUFMIN53A..08D

de Vila, M. H., Attar, R., Pereanez, M., & Frangi, A. F. (2018). MULTI-X, a State-of-the-Art Cloud-Based Ecosystem for Biomedical Research. 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 1726–1733. https://doi.org/10.1109/BIBM.2018.8621317

Dewan, N., Prasun; Joyce, Blake; Merchant. (2018). Human-Centric Programming in the Large—Command Languages to Scalable Cyber Training. 295–297. https://doi.org/10.1109/VLHCC.2018.8506564

Dick, G. (2018). Genomic Approaches in Earth and Environmental Sciences. http://doi.wiley.com/10.1002/9781118708231

Dickinson, J., Elizabeth; Rusilowicz, Martin J. ;. Dickinson, Michael; Charlton, Adrian J. ;. Bechtold, Ulrike; Mullineaux, Philip M. ;. Wilson. (2018). Integrating transcriptomic techniques and k-means clustering in metabolomics to identify markers of abiotic and biotic stress in Medicago truncatula. 14(10), 126. https://doi.org/10.1007/s11306-018-1424-y

Do, K. S., Huyen; Cetin. (2018). Residential Building Energy Consumption: A Review of Energy Data Availability, Characteristics, and Energy Performance Prediction Methods. 5(1), 76–85. https://doi.org/10.1007/s40518-018-0099-3

Domingues, L. D., Luisa N. ;. Guerrero, Felix D. ;. Cameron, Connor; Farmer, Andrew; Bendele, Kylie G. ;. Foil. (2018). The assembled transcriptome of the adult horn fly, Haematobia irritans. 19, 1933–1940. https://doi.org/10.1016/j.dib.2018.06.095

Dooley, J., Rion; Brandt, Steven R. ;. Fonner. (2018). The Agave Platform: An Open, Science-as-a-Service Platform for Digital Science. 8-Jan. https://doi.org/10.1145/3219104.3219129

Dooley, S., Rion; Cleveland. (2018). Accelerating Gateway Development with Agave ToGo Webapps and Microsites. http://ceur-ws.org/Vol-2357/paper4.pdf

Egyedi, M. A., , Attila L., Martin J. O’Connor, Marcos Martínez-Romero, Debra Willrett, Josef Hardi, John Graybeal; Musen. (2018). Using Semantic Technologies to Enhance Metadata Submissions to Public Repositories in Biomedicine. 2275, 1. http://ceur-ws.org/Vol-2275/paper1.pdf

Emerson, M. B., Joanne B. ;. Roux, Simon; Brum, Jennifer R. ;. Bolduc, Benjamin; Woodcroft, Ben J. ;. Jang, Ho Bin; Singleton, Caitlin M. ;. Solden, Lindsey M. ;. Naas, Adrian E. ;. Boyd, Joel A. ;. Hodgkins, Suzanne B. ;. Wilson, Rachel M. ;. Trubl, Gareth; Li, Changsheng; Frolking, Steve; Pope, Phillip B. ;. Wrighton, Kelly C. ;. Crill, Patrick M. ;. Chanton, Jeffrey P. ;. Saleska, Scott R. ;. Tyson, Gene W. ;. Rich, Virginia I. ;. Sullivan. (2018). Host-linked soil viral ecology along a permafrost thaw gradient. 3(8), 870–880. https://doi.org/10.1038/s41564-018-0190-y

Endara, H., Lorena; Thessen, Anne; Cole, Heather; Walls, Ramona; Gkoutos, Georgios; Cao, Yujie; Chong, Steven; Cui. (2018). Modifier Ontologies for frequency, certainty, degree, and coverage phenotype modifier. 6, e29232. https://doi.org/10.3897/BDJ.6.e29232

Enders, E., , Tara, Nathan Miller, Elizabeth Sampson, Sara Tirado, Nathan Springer; Spalding. (2018). Machine vision phenotyping platform for seedling growth and morphology. https://community.plantae.org/files/posts/5044038905985238342/32510ad6914bb14e0dd8290b4f55866c_Phenome%202018%20Speaker%20and%20Poster%20Abstracts.pdf

Essawy, T., Bakinam T. ;. Goodall, Jonathan L. ;. Zell, Wesley; Voce, Daniel; Morsy, Mohamed M. ;. Sadler, Jeffrey; Yuan, Zhihao; Malik. (2018). Integrating scientific cyberinfrastructures to improve reproducibility in computational hydrology: Example for HydroShare and GeoTrust. 105, 217–229. https://doi.org/10.1016/j.envsoft.2018.03.025

Falćon, W. (2018). Seed dispersal by chelonians: From individuals to communities [PhD Thesis, University of Zurich]. https://www.zora.uzh.ch/id/eprint/157486/

Farley, J. W., Scott S; Dawson, Andria; Goring, Simon J; Williams. (2018). Situating Ecology as a Big-Data Science: Current Advances, Challenges, and Solutions. 68(8), 563–576. https://doi.org/10.1093/biosci/biy068

Firrao, G., Torelli, E., Polano, C., Ferrante, P., Ferrini, F., Martini, M., Marcelletti, S., Scortichini, M., & Ermacora, P. (2018). Genomic Structural Variations Affecting Virulence During Clonal Expansion of Pseudomonas syringae pv. Actinidiae Biovar 3 in Europe. Frontiers in Microbiology, 9, 656. https://doi.org/10.3389/fmicb.2018.00656

Fischer, J., & Sudarshan, S. (2018). Introduction to Jetstream. J. Comput. Sci. Coll., 34(1), 189–191.

Fischer, S., , Jeremy; Sudarshan. (2018). Introduction to jetstream. 34, No. 1, 189–191.

Fusi, E., Federica; Manzella, Daniele; Louafi, Selim; Welch. (2018). Building Global Genomics Initiatives and Enabling Data Sharing: Insights from Multiple Case Studies. 22(4), 237–247. https://doi.org/10.1089/omi.2017.0214

Gadelha Jr., F., Luiz M. R. ;. de Siracusa, Pedro C. ;. Ziviani, Artur; Dalcin, Eduardo Couto; Affe, Helen Michelle; de Siqueira, Marinez Ferreira; da Silva, Luís Alexandre Estevão; Augusto, Douglas A. ;. Krempser, Eduardo; Chame, Marcia; Costa, Raquel Lopes; Meirelles, Pedro Milet; Thompson. (2018). A Survey of e-Biodiversity: Concepts, Practices, and Challenges. http://arxiv.org/abs/1810.00224

Gadelha, L. M. R., de Siracusa, P. C., Ziviani, A., Dalcin, E. C., Affe, H. M., de Siqueira, M. F., da Silva, L. A. E., Augusto, D. A., Krempser, E., Chame, M., Costa, R. L., Meirelles, P. M., & Thompson, F. (2018). A Survey of e-Biodiversity: Concepts, Practices, and Challenges. http://arxiv.org/abs/1810.00224

Ge, R., Steven Xijin; Son, Eun Wo; Yao. (2018). IDEP: an integrated web application for differential expression and pathway analysis of RNA-Seq data. 19(1), 534. https://doi.org/10.1186/s12859-018-2486-6

Gene regulatory networks: Methods and protocols. (2018). Springer Science+Business Media, LLC.

Gesing, A., Sandra; Dooley, Rion; Pierce, Marlon; Krüger, Jens; Grunzke, Richard; Herres-Pawlis, Sonja; Hoffmann. (2018). Gathering requirements for advancing simulations in HPC infrastructures via science gateways. 82, 544–554. https://doi.org/10.1016/j.future.2017.02.042

Gesing, S. (2018). Science Gateways in HPC: Usability Meets Efficiency and Effectiveness (C. Kołodziej Joanna; Pop, Florin; Dobre, Ed.; Vol. 36, pp. 73–86). http://link.springer.com/10.1007/978-3-319-73767-6_5

Gladstein, A. (2018). Inference of Recent Demographic History of Population Isolates Using Genome-Wide High Density SNP Arrays and Whole Genome Sequences—ProQuest [PhD Thesis, University of Arizona]. https://search.proquest.com/docview/2085905886/abstract/7845251F46D342E1PQ/1?accountid=8360

Gregory, B. C., Ann C. ;. Sullivan, Matthew B. ;. Segal, Leopoldo N. ;. Keller. (2018). Smoking is associated with quantifiable differences in the human lung DNA virome and metabolome. 19(1), 174. https://doi.org/10.1186/s12931-018-0878-9

Gupta, A., Xu, W., Jaiswal, P., Taylor, C., & Regala, J. (2018). Domain Informational Vocabulary Extraction Experiences with Publication Pipeline Integration and Ontology Curation. Proceedings of the 9th International Conference on Biological Ontology (ICBO 2018), 2285, No. 43.

Gupta, J., , Amit, Weijia Xu, Pankaj Jaiswal, Crispin Taylor; Regala. (2018). Domain Informational Vocabulary Extraction Experiences with Publication Pipeline Integration and Ontology Curation. 2285, No. 43. http://ceur-ws.org/Vol-2285/ICBO_2018_paper_43.pdf

Guralnick, D., Robert; Wieczorek, John; Bloom. (2018). The Death of VertNet Has Been Greatly Exaggerated But We Still Archive. 2, e26836. https://doi.org/10.3897/biss.2.26836

Hacisalihoglu, A. M., Gokhan; Kantanka, Sarfo; Miller, Nathan; Gustin, Jeffery L. ;. Settles. (2018). Modulation of early maize seedling performance via priming under sub-optimal temperatures. 13(11), e0206861. https://doi.org/10.1371/journal.pone.0206861

Hamm, E. L., , Lauren; Peredo. (2018). Biogeography of Gracilaria species in Waquoit Bay. https://www.semanticscholar.org/paper/Biogeography-of-Gracilaria-species-in-Waquoit-Bay-Hamm-Peredo/9eb158e794efe5e037ce52e63d94bbb026a1bb47

Hazekamp, D., , Nicholas, Upendra Kumar Devisetty, Nirav Merchant; Thain. (2018). MAKER as a Service: Moving HPC applications to Jetstream Cloud. http://ccl.cse.nd.edu/research/papers/maker-service-ic2e2018.pdf

He, M. (2018). Analysis of G-quadruplexes as environmental sensors: Novel statistical models and computational algorithms enable interpretation of complex gene expression patterns for maize under salt stress conditions [PhD Thesis, Iowa State University]. https://search.proquest.com/docview/2177250116?pq-origsite=gscholar

Heidorn, J., P. Bryan; Stahlman, Gretchen R. ;. Steffen. (2018). Astrolabe: Curating, Linking and Computing Astronomy’s Dark Data. 236(1), 3. https://doi.org/10.3847/1538-4365/aab77e

Hirsh, C. (2018). Machine vision phenotyping platform for seedling growth and morphology. https://community.plantae.org/files/posts/5044038905985238342/32510ad6914bb14e0dd8290b4f55866c_Phenome%202018%20Speaker%20and%20Poster%20Abstracts.pdf

Hoffman, M. D., Ava M. ;. Smith. (2018). Gene expression differs in codominant prairie grasses under drought. 18(2), 334–346. https://doi.org/10.1111/1755-0998.12733

Horvath, S., David P. ;. Bruggeman, Stephanie; Moriles-Miller, Janet; Anderson, James V. ;. Dogramaci, Munevver; Scheffler, Brian E. ;. Hernandez, Alvaro G. ;. Foley, Michael E. ;. Clay. (2018a). Weed presence altered biotic stress and light signaling in maize even when weeds were removed early in the critical weed-free period. 2(4), e00057. https://doi.org/10.1002/pld3.57

Horvath, S., David P. ;. Patel, Sagar; Doğramaci, Münevver; Chao, Wun S. ;. Anderson, James V. ;. Foley, Michael E. ;. Scheffler, Brian; Lazo, Gerard; Dorn, Kevin; Yan, Changhui; Childers, Anna; Schatz, Michel; Marcus. (2018b). Gene Space and Transcriptome Assemblies of Leafy Spurge ( Euphorbia esula ) Identify Promoter Sequences, Repetitive Elements, High-Quality Markers, and a Full-Length Chloroplast Genome. 66(3), 355–367. https://doi.org/10.1017/wsc.2018.2

Howard-Varona, M. B., Cristina; Hargreaves, Katherine R. ;. Solonenko, Natalie E. ;. Markillie, Lye Meng; White, Richard Allen; Brewer, Heather M. ;. Ansong, Charles; Orr, Galya; Adkins, Joshua N. ;. Sullivan. (2018). Multiple mechanisms drive phage infection efficiency in nearly identical hosts. 12(6), 1605–1618. https://doi.org/10.1038/s41396-018-0099-8

Howard-Varona, M. B., Cristina; Vik, Dean R. ;. Solonenko, Natalie E. ;. Gazitua, M. Consuelo; Hobbs, Zack; Honaker, Ryan W. ;. Kinkhabwala, Anika A. ;. Sullivan. (2018). Whole-Genome Sequences of Phages p000v and p000y, Which Infect the Bacterial Pathogen Shiga-Toxigenic Escherichia coli. 7(20), e01400-18, /mra/7/20/e01400-18.atom. https://doi.org/10.1128/MRA.01400-18

Howard-Varona, M., Cristina; Vik, Dean; Solonenko, Natalie; Li, Yueh-Fen; Gazitua, M. ;. Chittick, Lauren; Samiec, Jennifer; Jensen, Aubrey; Anderson, Paige; Howard-Varona, Adrian; Kinkhabwala, Anika; Abedon, Stephen; Sullivan. (2018). Fighting Fire with Fire: Phage Potential for the Treatment of E. coli O157 Infection. 7(4), 101. https://doi.org/10.3390/antibiotics7040101

Hubbard, A. H., , Jr. (2018). Data and -omics-driven approaches to understand the heat stress response: The development of scalable tools and methods to drive hypothesis generation. http://udspace.udel.edu/bitstream/handle/19716/23816/Hubbard_udel_0060D_13357.pdf?sequence=1&isAllowed=y

Hubbard, Jr., A. H. (2018). Data and -omics-driven approaches to understand the heat stress response: The development of scalable tools and methods to drive hypothesis generation [PhD Thesis, University of Delaware]. https://udspace.udel.edu/handle/19716/23816

Huot, C., Ordom Brian; Levy, Julien Gad; Tamborindeguy. (2018). Global gene regulation in tomato plant (Solanum lycopersicum) responding to vector (Bactericera cockerelli) feeding and pathogen (‘Candidatus Liberibacter solanacearum’) infection. 97(2-Jan), 57–72. https://doi.org/10.1007/s11103-018-0724-y

IEEE International Conference on Bioinformatics and Biomedicine, Zheng, H., Ulster University, Universidad de Granada, Universidad Carlos III de Madrid, Institute of Electrical and Electronics Engineers, IEEE Computer Society, IEEE Computer Society, & Technical Committee on Computational Life Sciences. (2018). Proceedings, 2018 IEEE International Conference on Bioinformatics and Biomedicine: 3-6 Dec. 2018, Madrid, Spain. https://ieeexplore.ieee.org/servlet/opac?punumber=8609864

Inostroza, P., Luis; Bhakta, Mehul; Acuña, Hernán; Vásquez, Catalina; Ibáñez, Joel; Tapia, Gerardo; Mei, Wenbin; Kirst, Matias; Resende, Marcio; Munoz. (2018). Understanding the Complexity of Cold Tolerance in White Clover using Temperature Gradient Locations and a GWAS Approach. 11(3), 0. https://doi.org/10.3835/plantgenome2017.11.0096

Irigoyen, K. K., Sonia; Bedre, Renesh H. ;. Scholthof, Karen-Beth G. ;. Mandadi. (2018). Genomic Approaches to Analyze Alternative Splicing, A Key Regulator of Transcriptome and Proteome Diversity in Brachypodium distachyon (P. J. Sablok Gaurav; Budak, Hikmet; Ralph, Ed.; Vol. 1667, pp. 73–85). http://link.springer.com/10.1007/978-1-4939-7278-4_7

Joyce, B. (2018). Image Analysis using CyVerse. https://community.plantae.org/files/posts/5044038905985238342/32510ad6914bb14e0dd8290b4f55866c_Phenome%202018%20Speaker%20and%20Poster%20Abstracts.pdf

Kalbfleisch, J. N., Theodore S. ;. Rice, Edward S. ;. DePriest, Michael S. ;. Walenz, Brian P. ;. Hestand, Matthew S. ;. Vermeesch, Joris R. ;. O′Connell, Brendan L. ;. Fiddes, Ian T. ;. Vershinina, Alisa O. ;. Saremi, Nedda F. ;. Petersen, Jessica L. ;. Finno, Carrie J. ;. Bellone, Rebecca R. ;. McCue, Molly E. ;. Brooks, Samantha A. ;. Bailey, Ernest; Orlando, Ludovic; Green, Richard E. ;. Miller, Donald C. ;. Antczak, Douglas F. ;. MacLeod. (2018). Improved reference genome for the domestic horse increases assembly contiguity and composition. 1(1), 197. https://doi.org/10.1038/s42003-018-0199-z

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