2017 Publications

Adhikari, A. M., Laxman; Razar, Rasyidah M. ;. Paudel, Dev; Ding, Ruyue; Missaoui. (2017). Insights into Seasonal Dormancy of Perennial Herbaceous Forages. 8(11), 2650–2680. https://doi.org/10.4236/ajps.2017.811179

Agnew, C. N., Erica; Bray, Adam; Floro, Eric; Ellis, Nate; Gierer, John; Lizárraga, César; O’Brien, Darren; Wiechert, Madeline; Mockler, Todd C. ;. Shakoor, Nadia; Topp. (2017). Whole‐Plant Manual and Image‐Based Phenotyping in Controlled Environments. 2(1), 21-Jan. https://doi.org/10.1002/cppb.20044

Ahlgren, F., Nathan A; Ren, Jie; Lu, Yang Young; Fuhrman, Jed A; Sun. (2017). Alignment-free $d_2^*$ oligonucleotide frequency dissimilarity measure improves prediction of hosts from metagenomically-derived viral sequences. 45(1), 39–53. https://doi.org/10.1093/nar/gkw1002

Aloisio, J. M. (2017). Rooftop plants: Community and nutrient dynamics of New York City green roofs.

Barone, D., Lindsay; Williams, Jason; Micklos. (2017). Unmet needs for analyzing biological big data: A survey of 704 NSF principal investigators. 13(10), e1005755. https://doi.org/10.1371/journal.pcbi.1005755

Becker Scarpitta, M., Antoine; Bardat, Jacques; Lalanne, Arnault; Vellend. (2017). Long-term community change: Bryophytes are more responsive than vascular plants to nitrogen deposition and warming. 28(6), 1220–1229. https://doi.org/10.1111/jvs.12579

Belete, G. F. (2017a). Integrating models on the web: Applications for socio-environmental studies.

Belete, G. F., Getachew F. ;. Voinov, Alexey; Laniak. (2017b). An overview of the model integration process: From pre-integration assessment to testing. 87, 49–63. https://doi.org/10.1016/j.envsoft.2016.10.013

Blažun Vošner, P., Helena; Bobek, Samo; Sternad Zabukovšek, Simona; Kokol. (2017). Openness and information technology: A bibliometric analysis of literature production. 46(5), 750–766. https://doi.org/10.1108/K-10-2016-0292

Bolduc, M. B., Benjamin; Jang, Ho Bin; Doulcier, Guilhem; You, Zhi-Qiang; Roux, Simon; Sullivan. (2017a). VConTACT: an iVirus tool to classify double-stranded DNA viruses that infect Archaea and Bacteria. 5, e3243. https://doi.org/10.7717/peerj.3243

Bolduc, M. B., Benjamin; Youens-Clark, Ken; Roux, Simon; Hurwitz, Bonnie L; Sullivan. (2017b). iVirus: Facilitating new insights in viral ecology with software and community data sets imbedded in a cyberinfrastructure. 11(1), 14-Jul. https://doi.org/10.1038/ismej.2016.89

Bolger, B., Marie; Schwacke, Rainer; Gundlach, Heidrun; Schmutzer, Thomas; Chen, Jinbo; Arend, Daniel; Oppermann, Markus; Weise, Stephan; Lange, Matthias; Fiorani, Fabio; Spannagl, Manuel; Scholz, Uwe; Mayer, Klaus; Usadel. (2017). From plant genomes to phenotypes. 261, 46–52. https://doi.org/10.1016/j.jbiotec.2017.06.003

Brasil, M. R., Bruno dos Santos Alves Figueiredo; de Siqueira, Félix Gonçalves; Salum, Thaís Fabiana Chan; Zanette, Cristina Maria; Spier. (2017). Microalgae and cyanobacteria as enzyme biofactories. 25, 76–89. https://doi.org/10.1016/j.algal.2017.04.035

Brozynska, R. J., Marta; Copetti, Dario; Furtado, Agnelo; Wing, Rod A. ;. Crayn, Darren; Fox, Glen; Ishikawa, Ryuji; Henry. (2017). Sequencing of Australian wild rice genomes reveals ancestral relationships with domesticated rice. 15(6), 765–774. https://doi.org/10.1111/pbi.12674

Bucksch, J. S., Alexander; Das, Abhiram; Schneider, Hannah; Merchant, Nirav; Weitz. (2017). Overcoming the Law of the Hidden in Cyberinfrastructures. 22(2), 117–123. https://doi.org/10.1016/j.tplants.2016.11.014

Buonaccorsi, A., VP; Hamlin, D; Fowler, B; Sullivan, C; Sickler. (2017). An Introduction to Eukaryotic Genome Analysis in Non-model Species for Undergraduates: A tutorial from the Genome Consortium for Active Teaching.

Carvajal-Endara, T. J., Sofía; Hendry, Andrew P. ;. Emery, Nancy C. ;. Davies. (2017). Habitat filtering not dispersal limitation shapes oceanic island floras: Species assembly of the Galápagos archipelago. 20(4), 495–504. https://doi.org/10.1111/ele.12753

Chao, M. E., Wun S. ;. Doğramacı, Münevver; Horvath, David P. ;. Anderson, James V. ;. Foley. (2017). Comparison of phytohormone levels and transcript profiles during seasonal dormancy transitions in underground adventitious buds of leafy spurge. 94(3), 281–302. https://doi.org/10.1007/s11103-017-0607-7

Chard, J., Kyle; Dart, Eli; Foster, Ian; Shifflett, David; Tuecke, Steven; Williams. (2017). The Modern Research Data Portal: A design pattern for networked, data-intensive science. https://peerj.com/preprints/3194

Chen, J., Yihong; Zhang, Qing; Hu, Weichang; Zhang, Xingtan; Wang, Liming; Hua, Xiuting; Yu, Qingyi; Ming, Ray; Zhang. (2017). Evolution and expression of the fructokinase gene family in Saccharum. 18(1), 197. https://doi.org/10.1186/s12864-017-3535-7

Cicero, J. R., Carla; Spencer, Carol L; Bloom, David A; Guralnick, Robert P; Koo, Michelle S; Otegui, Javier; Russell, Laura A; Wieczorek. (2017). Biodiversity Informatics and Data Quality on a Global Scale1.

Coppens, S., Frederik; Wuyts, Nathalie; Inzé, Dirk; Dhondt. (2017). Unlocking the potential of plant phenotyping data through integration and data-driven approaches. 4, 58–63. https://doi.org/10.1016/j.coisb.2017.07.002

Coronel, S., Josue Balandrano; Mock. (2017). DesignSafe: Using Elasticsearch to Share and Search Data on a Science Web Portal. 3-Jan. https://doi.org/10.1145/3093338.3093386

Craig, P. A. (2017). A survey on faculty perspectives on the transition to a biochemistry course-based undergraduate research experience laboratory: Transition to a CURE. 45(5), 426–436. https://doi.org/10.1002/bmb.21060

Cutcher-Gershenfeld, I., Joel; Baker, Karen S. ;. Berente, Nicholas; Flint, Courtney; Gershenfeld, Gabriel; Grant, Brandon; Haberman, Michael; King, John Leslie; Kirkpatrick, Christine; Lawrence, Barbara; Lewis, Spenser; Lenhardt, W. Christopher; Mayernik, Matthew; McElroy, Charles; Mittleman, Barbara; Shin, Namchul; Stall, Shelley; Winter, Susan; Zaslavsky. (2017). Five ways consortia can catalyse open science. 543(7647), 615–617. https://doi.org/10.1038/543615a

D’Agostino, A., Daniele; Roverelli, Luca; Zereik, Gabriele; De Luca, Andrea; Salvaterra, Ruben; Belfiore, Andrea; Lisini, Gianni; Novara, Giovanni; Tiengo. (2017). A microservice-based portal for X-ray transient and variable sources. https://peerj.com/preprints/2519

DeChant, H., Chad; Wiesner-Hanks, Tyr; Chen, Siyuan; Stewart, Ethan L. ;. Yosinski, Jason; Gore, Michael A. ;. Nelson, Rebecca J. ;. Lipson. (2017). Automated Identification of Northern Leaf Blight-Infected Maize Plants from Field Imagery Using Deep Learning. 107(11), 1426–1432. https://doi.org/10.1094/PHYTO-11-16-0417-R

Deck, R., John; Stucky, Brian; Walls, Ramona; Ewing, Rodney; Genazzio, Melissa; Loescher, Henry; Guralnick. (2017). A High-throughput Data Ingest Pipeline for Semantic Data-stores. 1, e20208. https://doi.org/10.3897/tdwgproceedings.1.20208

Deist, S. J., Melissa S. ;. Gallardo, Rodrigo A. ;. Bunn, David A. ;. Dekkers, Jack C. M. ;. Zhou, Huaijun; Lamont. (2017a). Resistant and susceptible chicken lines show distinctive responses to Newcastle disease virus infection in the lung transcriptome. 18(1), 989. https://doi.org/10.1186/s12864-017-4380-4

Deist, S. J., Melissa S. ;. Gallardo, Rodrigo A. ;. Bunn, David A. ;. Kelly, Terra R. ;. Dekkers, Jack C. M. ;. Zhou, Huaijun; Lamont. (2017b). Novel Mechanisms Revealed in the Trachea Transcriptome of Resistant and Susceptible Chicken Lines following Infection with Newcastle Disease Virus. 24(5), e00027-17, /cdli/24/5/e00027-17.atom. https://doi.org/10.1128/CVI.00027-17

Dinkins, C. L., Randy D. ;. Nagabhyru, Padmaja; Graham, Michelle A. ;. Boykin, Deborah; Schardl. (2017). Transcriptome response of Lolium arundinaceum to its fungal endophyte Epichloë coenophiala. 213(1), 324–337. https://doi.org/10.1111/nph.14103

Dolan, A. L., Rebecca W. ;. Aronson, Myla F. J. ;. Hipp. (2017). Floristic response to urbanization: Filtering of the bioregional flora in Indianapolis, Indiana, USA. 104(8), 1179–1187. https://doi.org/10.3732/ajb.1700136

Eckes, W., , Annemarie, Tomasz Gubala, Piotr Nowakowski, Tomasz Szymczyszyn; Jurkowski. (2017). The Brassica Information Portal: Towards Integrating Phenotype and Genotype Data. C11. https://www.intlpag.org/2022/images/pdf/2017/PAGXXV-abstracts-computer_demos.pdf

Eckes, W., Annemarie H. ;. Gubała, Tomasz; Nowakowski, Piotr; Szymczyszyn, Tomasz; Wells, Rachel; Irwin, Judith A. ;. Horro, Carlos; Hancock, John M. ;. King, Graham; Dyer, Sarah C. ;. Jurkowski. (2017). Introducing the Brassica Information Portal: Towards integrating genotypic and phenotypic Brassica crop data. 6, 465. https://doi.org/10.12688/f1000research.11301.1

Enke, M., Raymond A; Rahmani-Mofrad. (2017). Genomics RNA-seq Analysis part 1-CyVerse DE, FastQC, Trimmomatic (updated 11/17).

Es, J., , Harold van; Woodard. (2017). Innovation in Agriculture and Food Systems in the Digital Age (pp. 97–104). http://www.wipo.int/edocs/pubdocs/en/wipo_pub_gii_2017-chapter4.pdf

Espiritu, K. M., , Kaitlyn, Bryant Lee; Shin. (2017). Assessment of SO2 Pollution in Central Park by DNA Barcoding of lichen specimens. https://aaas.confex.com/aaas/2017/webprogram/Paper19818.html

Esteva, R., Maria; Walls. (2017). Identifier services: Tracking objects and metadata across time and distributed storage systems. 85–86.

Farman, J., Mark; Peterson, Gary; Chen, Li; Starnes, John; Valent, Barbara; Bachi, Paul; Murdock, Lloyd; Hershman, Don; Pedley, Kerry; Fernandes, J. Mauricio; Bavaresco. (2017). The Lolium Pathotype of Magnaporthe oryzae Recovered from a Single Blasted Wheat Plant in the United States. 101(5), 684–692. https://doi.org/10.1094/PDIS-05-16-0700-RE

Fedorov, K. G., , Dmitry, BS Manjunath, Christian Lang; Kvilekval. (2017). Scalable Image Informatics. https://escholarship.org/uc/item/7nf7492x

Fischer, C. A., Jeremy; Hancock, David Y. ;. Lowe, John Michael; Turner, George; Snapp-Childs, Winona; Stewart. (2017). Jetstream: A Cloud System Enabling Learning in Higher Education Communities. 67–72. https://doi.org/10.1145/3123458.3123466

Fonner, R., John; Dooley. (2017). Containerizing Conda.

Fonseca, L. G., Larissa Fernanda Simielli; Gimenez, Daniele Fernanda Jovino; dos Santos Silva, Danielly Beraldo; Barthelson, Roger; Baldi, Fernando; Ferro, Jesus Aparecido; Albuquerque. (2017). Differences in global gene expression in muscle tissue of Nellore cattle with divergent meat tenderness. 18(1), 945. https://doi.org/10.1186/s12864-017-4323-0

Foster, D. B., , Ian; Gannon. (2017). Cloud Computing for Science and Engineering. https://books.google.com/books?id=FYc3DwAAQBAJ&printsec=frontcover&source=gbs_ge_summary_r&cad=0#v=onepage&q&f=false

Friesner, S. M., Joanna; Assmann, Sarah M. ;. Bastow, Ruth; Bailey-Serres, Julia; Beynon, Jim; Brendel, Volker; Buell, C. Robin; Bucksch, Alexander; Busch, Wolfgang; Demura, Taku; Dinneny, Jose R. ;. Doherty, Colleen J. ;. Eveland, Andrea L. ;. Falter-Braun, Pascal; Gehan, Malia A. ;. Gonzales, Michael; Grotewold, Erich; Gutierrez, Rodrigo; Kramer, Ute; Krouk, Gabriel; Ma, Shisong; Markelz, R. J. Cody; Megraw, Molly; Meyers, Blake C. ;. Murray, James A. H. ;. Provart, Nicholas J. ;. Rhee, Sue; Smith, Roger; Spalding, Edgar P. ;. Taylor, Crispin; Teal, Tracy K. ;. Torii, Keiko U. ;. Town, Chris; Vaughn, Matthew; Vierstra, Richard; Ware, Doreen; Wilkins, Olivia; Williams, Cranos; Brady. (2017). The Next Generation of Training for Arabidopsis Researchers: Bioinformatics and Quantitative Biology. 175(4), 1499–1509. https://doi.org/10.1104/pp.17.01490

Geniza, P., Matthew; Jaiswal. (2017). Tools for building de novo transcriptome assembly. 12-Nov, 41–45. https://doi.org/10.1016/j.cpb.2017.12.004

Gillan, M., Jeffrey; Karl, Jason; Elaksher, Ahmed; Duniway. (2017). Fine-Resolution Repeat Topographic Surveying of Dryland Landscapes Using UAS-Based Structure-from-Motion Photogrammetry: Assessing Accuracy and Precision against Traditional Ground-Based Erosion Measurements. 9(5), 437. https://doi.org/10.3390/rs9050437

Gilman, I. S. (2017). Systematics of Chloropyron (Orobanchaceae): Implications of missing data on quartet-based species tree methods.

Gnimpieba, C. M., Etienne Z. ;. VanDiermen, Menno S. ;. Gustafson, Shayla M. ;. Conn, Bill; Lushbough. (2017). Bio-TDS: bioscience query tool discovery system. 45(D1), D1117–D1122. https://doi.org/10.1093/nar/gkw940

Gorgolewski, R. A., Krzysztof J. ;. Alfaro-Almagro, Fidel; Auer, Tibor; Bellec, Pierre; Capotă, Mihai; Chakravarty, M. Mallar; Churchill, Nathan W. ;. Cohen, Alexander Li; Craddock, R. Cameron; Devenyi, Gabriel A. ;. Eklund, Anders; Esteban, Oscar; Flandin, Guillaume; Ghosh, Satrajit S. ;. Guntupalli, J. Swaroop; Jenkinson, Mark; Keshavan, Anisha; Kiar, Gregory; Liem, Franziskus; Raamana, Pradeep Reddy; Raffelt, David; Steele, Christopher J. ;. Quirion, Pierre-Olivier; Smith, Robert E. ;. Strother, Stephen C. ;. Varoquaux, Gaël; Wang, Yida; Yarkoni, Tal; Poldrack. (2017). BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods. 13(3), e1005209. https://doi.org/10.1371/journal.pcbi.1005209

Grealy, M., Alicia; Rawlence, Nicolas; Bunce. (2017). Time to Spread Your Wings: A Review of the Avian Ancient DNA Field. 8(7), 184. https://doi.org/10.3390/genes8070184

Grover, E., Jeffrey W. ;. Bomhoff, Matthew; Davey, Sean; Gregory, Brian D. ;. Mosher, Rebecca A. ;. Lyons. (2017). CoGe LoadExp+: A web-based suite that integrates next-generation sequencing data analysis workflows and visualization. 1(2). https://doi.org/10.1002/pld3.8

Hacker, S., Thomas; Dyke. (2017). Cyberinfrastructure to Empower Scientific Research (M. Pollard Andrew; Castillo, Luciano; Danaila, Luminita; Glauser, Ed.; pp. 483–495). http://link.springer.com/10.1007/978-3-319-41217-7_26

Hancock, D. (2017). Jetstream: Early Operations Performance, Adoption, and Impacts. 7-Jul. https://doi.org/10.1145/3147213.3155104

Holdgraf, D., Chris; Culich, Aaron; Rokem, Ariel; Deniz, Fatma; Alegro, Maryana; Ushizima. (2017). Portable learning environments for hands-on computational instruction: Using container- and cloud-based technology to teach data science. http://arxiv.org/abs/1703.04900

Howard-Varona, M. B., Cristina; Roux, Simon; Dore, Hugo; Solonenko, Natalie E; Holmfeldt, Karin; Markillie, Lye M; Orr, Galya; Sullivan. (2017). Regulation of infection efficiency in a globally abundant marine Bacteriodetes virus. 11(1), 284–295. https://doi.org/10.1038/ismej.2016.81

Hwang, K. (2017). Cloud Computing for Machine Learning and Cognitive Applications: A Machine Learning Approach.

Hwang, M., Kai; Chen. (2017). Big-data analytics for cloud, IoT and cognitive computing.

Hyman, S., Glenn; Espinosa, Herlin; Camargo, Paola; Abreu, David; Devare, Medha; Arnaud, Elizabeth; Porter, Cheryl; Mwanzia, Leroy; Sonder, Kai; Traore. (2017). Improving agricultural knowledge management: The AgTrials experience. 6, 317. https://doi.org/10.12688/f1000research.11179.1

Iamartino, J. L., Daniela; Nicolazzi, Ezequiel L. ;. Van Tassell, Curtis P. ;. Reecy, James M. ;. Fritz-Waters, Eric R. ;. Koltes, James E. ;. Biffani, Stefano; Sonstegard, Tad S. ;. Schroeder, Steven G. ;. Ajmone-Marsan, Paolo; Negrini, Riccardo; Pasquariello, Rolando; Ramelli, Paola; Coletta, Angelo; Garcia, José F. ;. Ali, Ahmad; Ramunno, Luigi; Cosenza, Gianfranco; de Oliveira, Denise A. A. ;. Drummond, Marcela G. ;. Bastianetto, Eduardo; Davassi, Alessandro; Pirani, Ali; Brew, Fiona; Williams. (2017). Design and validation of a 90K SNP genotyping assay for the water buffalo (Bubalus bubalis). 12(10), e0185220. https://doi.org/10.1371/journal.pone.0185220

Jamil, H. M. (2017). A Visual Interface for Querying Heterogeneous Phylogenetic Databases. 14(1), 131–144. https://doi.org/10.1109/TCBB.2016.2520943

Janssen, J. M., Sander J. C. ;. Porter, Cheryl H. ;. Moore, Andrew D. ;. Athanasiadis, Ioannis N. ;. Foster, Ian; Jones, James W. ;. Antle. (2017). Towards a new generation of agricultural system data, models and knowledge products: Information and communication technology. 155, 200–212. https://doi.org/10.1016/j.agsy.2016.09.017

Jiang, R., Yu; Li, Changying; Sun, Shangpeng; Paterson, Andrew H. ;. Xu. (2017). <i>GPhenoVision: A Ground Mobile System with Multi-modal Imaging for Field-based High Throughput Phenotyping of Cotton</i> https://doi.org/10.13031/aim.201700438

Jin, D. C., Xiongbing; Robinson, Kirsten; Lee, Allen; Polhill, J. Gary; Pritchard, Calvin; Parker. (2017). A prototype cloud-based reproducible data analysis and visualization platform for outputs of agent-based models. 96, 172–180. https://doi.org/10.1016/j.envsoft.2017.06.010

Joshi, D., Trupti; Wang, Jiaojiao; Zhang, Hongxin; Chen, Shiyuan; Zeng, Shuai; Xu, Bowei; Xu. (2017). The Evolution of Soybean Knowledge Base (SoyKB) (A. D. J. van Dijk, Ed.; Vol. 1533, pp. 149–159). http://link.springer.com/10.1007/978-1-4939-6658-5_7

Joyce, E., Blake L. ;. Haug-Baltzell, Asher K. ;. Hulvey, Jonathan P. ;. McCarthy, Fiona; Devisetty, Upendra Kumar; Lyons. (2017). Leveraging CyVerse Resources for De Novo Comparative Transcriptomics of Underserved (Non-model) Organisms. 123, 55009. https://doi.org/10.3791/55009

Kang, R., Dae-Wook; Adams, James B. ;. Gregory, Ann C. ;. Borody, Thomas; Chittick, Lauren; Fasano, Alessio; Khoruts, Alexander; Geis, Elizabeth; Maldonado, Juan; McDonough-Means, Sharon; Pollard, Elena L. ;. Roux, Simon; Sadowsky, Michael J. ;. Lipson, Karen Schwarzberg; Sullivan, Matthew B. ;. Caporaso, J. Gregory; Krajmalnik-Brown. (2017). Microbiota Transfer Therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: An open-label study. 5(1), 10. https://doi.org/10.1186/s40168-016-0225-7

Knepper, R. (2017). Shifting Modalities of Use in the XSEDE Project.

Knepper, S., Richard; Coulter, Eric; Pierce, Marlon; Marru, Suresh; Pamidighantam. (2017). Using the Jetstream Research Cloud to Provide Science Gateway Resources. 753–757. https://doi.org/10.1109/CCGRID.2017.121

König, H., Christian; Weigelt, Patrick; Kreft. (2017). Dissecting global turnover in vascular plants: Global turnover in vascular plants. 26(2), 228–242. https://doi.org/10.1111/geb.12536

Krishnamurthy, S., Ashok; Bradford, Kira; Calloway, Chris; Castillo, Claris; Conway, Mike; Coposky, Jason; Guo, Yue; Idaszak, Ray; Lenhardt, W. Christopher; Robasky, Kimberly; Russell, Terrell; Scott, Erik; Sliwowski, Marcin; Stealey, Michael; Urgo, Kelsey; Xu, Hao; Yi, Hong; Ahalt. (2017). XDCI, a data science cyberinfrastructure for interdisciplinary research. 7-Jan. https://doi.org/10.1109/HPEC.2017.8091022

Lamsal, P. G., Abhishes; Welch, S. M. ;. Jones, J. W. ;. Boote, K. J. ;. Asebedo, Antonio; Crain, Jared; Wang, Xu; Boyer, Will; Giri, Anju; Frink, Elizabeth; Xu, Xuan; Gundy, Garrison; Ou, Junjun; Arachchige. (2017). Efficient crop model parameter estimation and site characterization using large breeding trial data sets. 157, 170–184. https://doi.org/10.1016/j.agsy.2017.07.016

Levy, E. A., Julien G. ;. Mendoza, Azucena; Miller, J. Creighton; Tamborindeguy, Cecilia; Pierson. (2017). Global gene expression in two potato cultivars in response to ‘Candidatus Liberibacter solanacearum’ infection. 18(1), 960. https://doi.org/10.1186/s12864-017-4313-2

List, M. (2017). Using Docker Compose for the Simple Deployment of an Integrated Drug Target Screening Platform. 14(2). https://doi.org/10.1515/jib-2017-0016

Liu, G., Hongjun; Zhang, Lin; Wang, Jiechen; Li, Changsheng; Zeng, Xing; Xie, Shupeng; Zhang, Yongzhong; Liu, Sisi; Hu, Songlin; Wang, Jianhua; Lee, Michael; Lübberstedt, Thomas; Zhao. (2017). Quantitative Trait Locus Analysis for Deep-Sowing Germination Ability in the Maize IBM Syn10 DH Population. 8, 813. https://doi.org/10.3389/fpls.2017.00813

Lobet, G. (2017). Image Analysis in Plant Sciences: Publish Then Perish. 22(7), 559–566. https://doi.org/10.1016/j.tplants.2017.05.002

Lopes dos Santos, W., Adriana; Pollina, Thibaut; Gourvil, Priscillia; Corre, Erwan; Marie, Dominique; Garrido, José Luis; Rodríguez, Francisco; Noël, Mary-Hélène; Vaulot, Daniel; Eikrem. (2017). Chloropicophyceae, a new class of picophytoplanktonic prasinophytes. 7(1), 14019. https://doi.org/10.1038/s41598-017-12412-5

Luo, J., Ming-Cheng; Gu, Yong Q. ;. Puiu, Daniela; Wang, Hao; Twardziok, Sven O. ;. Deal, Karin R. ;. Huo, Naxin; Zhu, Tingting; Wang, Le; Wang, Yi; McGuire, Patrick E. ;. Liu, Shuyang; Long, Hai; Ramasamy, Ramesh K. ;. Rodriguez, Juan C. ;. Van, Sonny L. ;. Yuan, Luxia; Wang, Zhenzhong; Xia, Zhiqiang; Xiao, Lichan; Anderson, Olin D. ;. Ouyang, Shuhong; Liang, Yong; Zimin, Aleksey V. ;. Pertea, Geo; Qi, Peng; Bennetzen, Jeffrey L. ;. Dai, Xiongtao; Dawson, Matthew W. ;. Müller, Hans-Georg; Kugler, Karl; Rivarola-Duarte, Lorena; Spannagl, Manuel; Mayer, Klaus F. X. ;. Lu, Fu-Hao; Bevan, Michael W. ;. Leroy, Philippe; Li, Pingchuan; You, Frank M. ;. Sun, Qixin; Liu, Zhiyong; Lyons, Eric; Wicker, Thomas; Salzberg, Steven L. ;. Devos, Katrien M. ;. Dvořák. (2017). Genome sequence of the progenitor of the wheat D genome Aegilops tauschii. 551(7681), 498–502. https://doi.org/10.1038/nature24486

Makarevitch, B., Irina; Martinez-Vaz. (2017). Killing two birds with one stone: Model plant systems as a tool to teach the fundamental concepts of gene expression while analyzing biological data. 1860(1), 166–173. https://doi.org/10.1016/j.bbagrm.2016.04.012

Manching, A. E., Heather C. ;. Carlson, Kara; Kosowsky, Sean; Smitherman, C. Tyler; Stapleton. (2017). Maize Phyllosphere Microbial Community Niche Development Across Stages of Host Leaf Growth. 6, 1698. https://doi.org/10.12688/f1000research.12490.2

Miller, E. P., Nathan D. ;. Haase, Nicholas J. ;. Lee, Jonghyun; Kaeppler, Shawn M. ;. de Leon, Natalia; Spalding. (2017). A robust, high-throughput method for computing maize ear, cob, and kernel attributes automatically from images. 89(1), 169–178. https://doi.org/10.1111/tpj.13320

Minervini, S. A., Massimo; Giuffrida, Mario V. ;. Perata, Pierdomenico; Tsaftaris. (2017). Phenotiki: An open software and hardware platform for affordable and easy image-based phenotyping of rosette-shaped plants. 90(1), 204–216. https://doi.org/10.1111/tpj.13472

Molin, C. A., William T. ;. Wright, Alice A. ;. Lawton-Rauh, Amy; Saski. (2017). The unique genomic landscape surrounding the EPSPS gene in glyphosate resistant Amaranthus palmeri: A repetitive path to resistance. 18(1), 91. https://doi.org/10.1186/s12864-016-3336-4

Moller, C., Abraham G; Liang. (2017). MetaCRAST: reference-guided extraction of CRISPR spacers from unassembled metagenomes. 5, e3788.

Mondal, N. K., Tapan Kumar; Rawal, Hukam Chand; Gaikwad, Kishor; Sharma, Tilak Raj; Singh. (2017). First de novo draft genome sequence of Oryza coarctata, the only halophytic species in the genus Oryza. 6, 1750. https://doi.org/10.12688/f1000research.12414.1

Monier, T. A., Adam; Chambouvet, Aurélie; Milner, David S. ;. Attah, Victoria; Terrado, Ramón; Lovejoy, Connie; Moreau, Hervé; Santoro, Alyson E. ;. Derelle, Évelyne; Richards. (2017). Host-derived viral transporter protein for nitrogen uptake in infected marine phytoplankton. 114(36), E7489–E7498. https://doi.org/10.1073/pnas.1708097114

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