2016 Publications

Afgan, J., Enis; Baker, Dannon; van den Beek, Marius; Blankenberg, Daniel; Bouvier, Dave; Čech, Martin; Chilton, John; Clements, Dave; Coraor, Nate; Eberhard, Carl; Grüning, Björn; Guerler, Aysam; Hillman-Jackson, Jennifer; Von Kuster, Greg; Rasche, Eric; Soranzo, Nicola; Turaga, Nitesh; Taylor, James; Nekrutenko, Anton; Goecks. (2016). The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update. 44(W1), W3–W10. https://doi.org/10.1093/nar/gkw343

An, C., Nan; Palmer, Christine M. ;. Baker, Robert L. ;. Markelz, R. J. Cody; Ta, James; Covington, Michael F. ;. Maloof, Julin N. ;. Welch, Stephen M. ;. Weinig. (2016). Plant high-throughput phenotyping using photogrammetry and imaging techniques to measure leaf length and rosette area. 127, 376–394. https://doi.org/10.1016/j.compag.2016.04.002

Antin, P. (2016). Introducing CyVerse. W242. https://pag.confex.com/pag/xxiv/webprogram/Paper21734.html

Ariani, L., Andrea; Romeo, Stefania; Groover, Andrew T. ;. Sebastiani. (2016). Comparative epigenomic and transcriptomic analysis of Populus roots under excess Zn. 132, 16–27. https://doi.org/10.1016/j.envexpbot.2016.08.005

Augustine, R. D., Robert C. ;. York, Samuel L. ;. Rytz, Thérèse C. ;. Vierstra. (2016). Defining the SUMO System in Maize: SUMOylation Is Up-Regulated during Endosperm Development and Rapidly Induced by Stress. 171(3), 2191–2210. https://doi.org/10.1104/pp.16.00353

Baldeck, G. P., C. A. ;. Tupayachi, R. ;. Sinca, F. ;. Jaramillo, N. ;. Asner. (2016). Environmental drivers of tree community turnover in western Amazonian forests. 39(11), 1089–1099. https://doi.org/10.1111/ecog.01575

Barker, D. A., Michael S. ;. Arrigo, Nils; Baniaga, Anthony E. ;. Li, Zheng; Levin. (2016). On the relative abundance of autopolyploids and allopolyploids. 210(2), 391–398. https://doi.org/10.1111/nph.13698

Bassi, S. F., Filippo M. ;. Ghavami, Farhad; Hayden, Matthew J. ;. Wang, Yi; Forrest, Kerrie L. ;. Kong, Stephan; Dizon, Rhoderissa; Michalak de Jimenez, Monika K. ;. Meinhardt, Steven W. ;. Mergoum, Mohamed; Gu, Yong Q. ;. Kianian. (2016). Fast-forward genetics by radiation hybrids to saturate the locus regulating nuclear-cytoplasmic compatibility in Triticum. 14(8), 1716–1726. https://doi.org/10.1111/pbi.12532

Berton, F., Mariana P. ;. Fonseca, Larissa F. S. ;. Gimenez, Daniela F. J. ;. Utembergue, Bruno L. ;. Cesar, Aline S. M. ;. Coutinho, Luiz L. ;. de Lemos, Marcos Vinicius A. ;. Aboujaoude, Carolyn; Pereira, Angélica S. C. ;. Silva, Rafael M. de O; Stafuzza, Nedenia B. ;. Feitosa, Fabieli L. B. ;. Chiaia, Hermenegildo L. J. ;. Olivieri, Bianca F. ;. Peripolli, Elisa; Tonussi, Rafael L. ;. Gordo, Daniel M. ;. Espigolan, Rafael; Ferrinho, Adrielle M. ;. Mueller, Lenise F. ;. de Albuquerque, Lucia G. ;. de Oliveira, Henrique N. ;. Duckett, Susan; Baldi. (2016). Gene expression profile of intramuscular muscle in Nellore cattle with extreme values of fatty acid. 17(1), 972. https://doi.org/10.1186/s12864-016-3232-y

Billah, R. W., Mirza M. ;. Goodall, Jonathan L. ;. Narayan, Ujjwal; Essawy, Bakinam T. ;. Lakshmi, Venkat; Rajasekar, Arcot; Moore. (2016). Using a data grid to automate data preparation pipelines required for regional-scale hydrologic modeling. 78, 31–39. https://doi.org/10.1016/j.envsoft.2015.12.010

Blank, R. L., Carrine E. ;. Cui, Hong; Moore, Lisa R. ;. Walls. (2016). MicrO: an ontology of phenotypic and metabolic characters, assays, and culture media found in prokaryotic taxonomic descriptions. 7(1), 18. https://doi.org/10.1186/s13326-016-0060-6

Bombarely, C., Aureliano; Moser, Michel; Amrad, Avichai; Bao, Manzhu; Bapaume, Laure; Barry, Cornelius S. ;. Bliek, Mattijs; Boersma, Maaike R. ;. Borghi, Lorenzo; Bruggmann, Rémy; Bucher, Marcel; D’Agostino, Nunzio; Davies, Kevin; Druege, Uwe; Dudareva, Natalia; Egea-Cortines, Marcos; Delledonne, Massimo; Fernandez-Pozo, Noe; Franken, Philipp; Grandont, Laurie; Heslop-Harrison, J. S. ;. Hintzsche, Jennifer; Johns, Mitrick; Koes, Ronald; Lv, Xiaodan; Lyons, Eric; Malla, Diwa; Martinoia, Enrico; Mattson, Neil S. ;. Morel, Patrice; Mueller, Lukas A. ;. Muhlemann, Joëlle; Nouri, Eva; Passeri, Valentina; Pezzotti, Mario; Qi, Qinzhou; Reinhardt, Didier; Rich, Melanie; Richert-Pöggeler, Katja R. ;. Robbins, Tim P. ;. Schatz, Michael C. ;. Schranz, M. Eric; Schuurink, Robert C. ;. Schwarzacher, Trude; Spelt, Kees; Tang, Haibao; Urbanus, Susan L. ;. Vandenbussche, Michiel; Vijverberg, Kitty; Villarino, Gonzalo H. ;. Warner, Ryan M. ;. Weiss, Julia; Yue, Zhen; Zethof, Jan; Quattrocchio, Francesca; Sims, Thomas L. ;. Kuhlemeier. (2016). Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida. 2(6), 16074. https://doi.org/10.1038/nplants.2016.74

Bomhoff, M. (2016). Next-Gen Sequence Analysis in CoGe: Read Alignment, Expression Analysis, SNP Identification, and What’s to Come. W411. https://pag.confex.com/pag/xxiv/webprogram/Paper18549.html

Boyle, A. A., Sarah A. ;. Thompson, Cynthia L. ;. Deluycker, Anneke; Alvarez, Silvia J. ;. Alvim, Thiago H. G. ;. Aquino, Rolando; Bezerra, Bruna M. ;. Boubli, Jean P. ;. Bowler, Mark; Caselli, Christini Barbosa; Chagas, Renata R. D. ;. Ferrari, Stephen F. ;. Fontes, Isadora P. ;. Gregory, Tremaine; Haugaasen, Torbjørn; Heiduck, Stefanie; Hores, Rose; Lehman, Shawn; de Melo, Fabiano R. ;. Moreira, Leandro S. ;. Moura, Viviane S. ;. Nagy-Reis, Mariana B. ;. Palacios, Erwin; Palminteri, Suzanne; Peres, Carlos A. ;. Pinto, Liliam; Port-Carvalho, Marcio; Rodríguez, Adriana; dos Santos, Ricardo R. ;. Setz, Eleonore Z. F. ;. Shaffer, Christopher A. ;. Silva, Felipe Ennes; Soares da Silva, Rafaela F. ;. Souza-Alves, João P. ;. Trevelin, Leonardo C. ;. Veiga, Liza M. ;. Vieira, Tatiana M. ;. DuBose, Mary E. ;. Barnett. (2016). Geographic comparison of plant genera used in frugivory among the pitheciids Cacajao , Callicebus , Chiropotes , and Pithecia: Geographic Patterns in Pitheciid Frugivory. 78(5), 493–506. https://doi.org/10.1002/ajp.22422

Brooks, S. S., Catherine F. ;. Heidorn, P. Bryan; Stahlman, Gretchen R. ;. Chong. (2016). Working beyond the confines of academic discipline to resolve a real-world problem: A community of scientists discussing long-tail data in the cloud. 21(2). https://doi.org/10.5210/fm.v21i2.6103

Brozynska, M. (2016). Genomic characterisation of Australian wild rice species.

Brum, J. R., Ignacio-Espinoza, J. C., Kim, E.-H., Trubl, G., Jones, R. M., Roux, S., VerBerkmoes, N. C., Rich, V. I., & Sullivan, M. B. (2016). Illuminating structural proteins in viral “dark matter” with metaproteomics. Proceedings of the National Academy of Sciences, 113(9), 2436–2441. https://doi.org/10.1073/pnas.1525139113

Brum, M. B., Jennifer R; Hurwitz, Bonnie L; Schofield, Oscar; Ducklow, Hugh W; Sullivan. (2016). Seasonal time bombs: Dominant temperate viruses affect Southern Ocean microbial dynamics. 10(2), 437–449. https://doi.org/10.1038/ismej.2015.125

Burris, J. N. (2016). Nanocomposite Adhesive of English ivy (Hedera helix): Bioproduction, Nanoparticle Isolation, and Molecular Analysis.

Buttigieg, C. J., Pier Luigi; Jensen, Mark; Walls, Ramona L; Mungall. (2016a). Environmental Semantics for Sustainable Development in an Interconnected Biosphere.

Buttigieg, C. J., Pier Luigi; Pafilis, Evangelos; Lewis, Suzanna E. ;. Schildhauer, Mark P. ;. Walls, Ramona L. ;. Mungall. (2016b). The environment ontology in 2016: Bridging domains with increased scope, semantic density, and interoperation. 7(1), 57. https://doi.org/10.1186/s13326-016-0097-6

Cahill, J. S., Abigail E. ;. Levinton. (2016). Genetic differentiation and reduced genetic diversity at the northern range edge of two species with different dispersal modes. 25(2), 515–526. https://doi.org/10.1111/mec.13497

Castelaanos, J. D. (2016). Integrated, Accurate and Multi-Environment Structural Variation Discovery from Whole Genome Sequencing Data with NGSEP. P19823. https://pag.confex.com/pag/xxiv/webprogram/Paper19823.html

Center for Molecular Biology, Y., Alabama A&M University, Normal AL, 35762, USA; Tilahun. (2016). Genome-wide transcriptome profiling of Gossypium spp. Roots during early growth after infection with Rotylenchulus reniformis. 9(3), 198–204. https://doi.org/10.21475/poj.16.09.03.p7816

Chakrabarti, A. G., Manohar; Dinkins, Randy D. ;. Hunt. (2016). De novo Transcriptome Assembly and Dynamic Spatial Gene Expression Analysis in Red Clover. 9(2), 0. https://doi.org/10.3835/plantgenome2015.06.0048

Chard, I., Kyle; Lidman, Mattias; McCollam, Brendan; Bryan, Josh; Ananthakrishnan, Rachana; Tuecke, Steven; Foster. (2016a). Globus Nexus: A Platform-as-a-Service provider of research identity, profile, and group management. 56, 571–583. https://doi.org/10.1016/j.future.2015.09.006

Chard, I., Kyle; Tuecke, Steven; Foster. (2016b). Globus: Recent Enhancements and Future Plans. 8-Jan. https://doi.org/10.1145/2949550.2949554

Church, A. M., Philip C. ;. Goscinski. (2016). Data and data servers exposed as services integrated in a cloud. 5(4), 264. https://doi.org/10.1504/IJCC.2016.080901

Cooper, P. others, Laurel; Meier, Austin; Elser, Justin; Preece, Justin; Xu, Xu; Kitchen, Ryan; Qu, Botong; Zhang, Eugene; Todorovic, Sinisa; Jaiswal. (2016a). The Planteome Project.

Cooper, P., Laurel; Jaiswal. (2016b). The Plant Ontology: A Tool for Plant Genomics (D. Edwards, Ed.; Vol. 1374, pp. 89–114). http://link.springer.com/10.1007/978-1-4939-3167-5_5

Cottingham, R. W. et al. (2016). The DOE Systems Biology Knowledgebase (KBase): Introduction to a System for Collaborative and Reproducible Inference and Modeling of Biological Function. P1278. https://pag.confex.com/pag/xxiv/webprogram/Paper19547.html

Coulter, C., Eric; Fischer, Jeremy; Hallock, Barbara; Knepper, Richard; Lifka, Dave; Navarro, Jp; Pierce, Marlon; Stewart. (2016). Cyberinfrastructure as a Platform to Facilitate Effective Collaboration between Institutions and Support Collaboratories. 37–42. https://doi.org/10.1145/2974927.2974962

Cruz-Garcia, D. E., Gisella S. ;. Struik, Paul C. ;. Johnson. (2016). Wild harvest: Distribution and diversity of wild food plants in rice ecosystems of Northeast Thailand. 78, 11-Jan. https://doi.org/10.1016/j.njas.2015.12.003

Cuevas, A. H., Hugo E. ;. Zhou, Chengbo; Tang, Haibao; Khadke, Prashant P. ;. Das, Sayan; Lin, Yann-Rong; Ge, Zhengxiang; Clemente, Thomas; Upadhyaya, Hari D. ;. Hash, C. Thomas; Paterson. (2016). The Evolution of Photoperiod-Insensitive Flowering in Sorghum, A Genomic Model for Panicoid Grasses. 33(9), 2417–2428. https://doi.org/10.1093/molbev/msw120

Cutcher-Gershenfeld, I., Joel; Baker, Karen S; Berente, Nicholas; Carter, Dorothy R; DeChurch, Leslie A; Flint, Courtney C; Gershenfeld, Gabriel; Haberman, Michael; King, John Leslie; Kirkpatrick, Christine; Knight, Eric; Lawrence, Barbara; Lewis, Spenser; Lenhardt, W. Christopher; Lopez, Pablo; Mayernik, Matthew S; McElroy, Charles; Mittleman, Barbara; Nichol, Victor; Nolan, Mark; Shin, Namchul; Thompson, Cheryl A; Winter, Susan; Zaslavsky. (2016). Build It, But Will They Come? A Geoscience Cyberinfrastructure Baseline Analysis. 15(0), 8. https://doi.org/10.5334/dsj-2016-008

Das, D. L., Sunetra; Pitts, Natalie L. ;. Mudron, Megan R. ;. Durica, David S. ;. Mykles. (2016). Transcriptome analysis of the molting gland (Y-organ) from the blackback land crab, Gecarcinus lateralis. 17, 26–40. https://doi.org/10.1016/j.cbd.2015.11.003

Dash, S. B., Sudhansu; Campbell, Jacqueline D. ;. Cannon, Ethalinda K. S. ;. Cleary, Alan M. ;. Huang, Wei; Kalberer, Scott R. ;. Karingula, Vijay; Rice, Alex G. ;. Singh, Jugpreet; Umale, Pooja E. ;. Weeks, Nathan T. ;. Wilkey, Andrew P. ;. Farmer, Andrew D. ;. Cannon. (2016). Legume information system (LegumeInfo.org): A key component of a set of federated data resources for the legume family. 44(D1), D1181–D1188. https://doi.org/10.1093/nar/gkv1159

Davey, P., Peter A. ;. Pernice, Mathieu; Sablok, Gaurav; Larkum, Anthony; Lee, Huey Tyng; Golicz, Agnieszka; Edwards, David; Dolferus, Rudy; Ralph. (2016). The emergence of molecular profiling and omics techniques in seagrass biology; furthering our understanding of seagrasses. 16(5), 465–480. https://doi.org/10.1007/s10142-016-0501-4

DeBarry, J. (2016a). How to do Big-Data Science—Data Management for Genomics. W246. https://pag.confex.com/pag/xxiv/webprogram/Paper21738.html

DeBarry, J. (2016b). Integration of CoGe’s Data Services in iPlant. W415. https://pag.confex.com/pag/xxiv/webprogram/Paper18554.html

Devisetty, E., Upendra Kumar; Kennedy, Kathleen; Sarando, Paul; Merchant, Nirav; Lyons. (2016). Bringing your tools to CyVerse Discovery Environment using Docker. 5, 1442. https://doi.org/10.12688/f1000research.8935.1

Dill, C. (2016). Genomes to Fields (G2F). W585. https://pag.confex.com/pag/xxiv/webprogram/Paper21710.html

Doughty, M., Christopher E. ;. Wolf, Adam; Morueta-Holme, Naia; Jørgensen, Peter M. ;. Sandel, Brody; Violle, Cyrille; Boyle, Brad; Kraft, Nathan J. B. ;. Peet, Robert K. ;. Enquist, Brian J. ;. Svenning, Jens-Christian; Blake, Stephen; Galetti. (2016). Megafauna extinction, tree species range reduction, and carbon storage in Amazonian forests. 39(2), 194–203. https://doi.org/10.1111/ecog.01587

Dvorak, J. (2016). Reference Sequence of the Genome of Aegilops tauschii, the Progenitor of the Wheat D Genome. W972. https://pag.confex.com/pag/xxiv/webprogram/Paper20195.html

Engel, B., Philipp; Kwong, Waldan K. ;. McFrederick, Quinn; Anderson, Kirk E. ;. Barribeau, Seth Michael; Chandler, James Angus; Cornman, R. Scott; Dainat, Jacques; de Miranda, Joachim R. ;. Doublet, Vincent; Emery, Olivier; Evans, Jay D. ;. Farinelli, Laurent; Flenniken, Michelle L. ;. Granberg, Fredrik; Grasis, Juris A. ;. Gauthier, Laurent; Hayer, Juliette; Koch, Hauke; Kocher, Sarah; Martinson, Vincent G. ;. Moran, Nancy; Munoz-Torres, Monica; Newton, Irene; Paxton, Robert J. ;. Powell, Eli; Sadd, Ben M. ;. Schmid-Hempel, Paul; Schmid-Hempel, Regula; Song, Se Jin; Schwarz, Ryan S. ;. vanEngelsdorp, Dennis; Dainat. (2016). The Bee Microbiome: Impact on Bee Health and Model for Evolution and Ecology of Host-Microbe Interactions. 7(2), e02164-15, /mbio/7/2/e02164-15.atom. https://doi.org/10.1128/mBio.02164-15

Engemann, J.-C., Kristine; Sandel, Brody; Enquist, Brian J. ;. Jørgensen, Peter Møller; Kraft, Nathan; Marcuse-Kubitza, Aaron; McGill, Brian; Morueta-Holme, Naia; Peet, Robert K. ;. Violle, Cyrille; Wiser, Susan; Svenning. (2016). Patterns and drivers of plant functional group dominance across the Western Hemisphere: A macroecological re-assessment based on a massive botanical dataset. 180(2), 141–160. https://doi.org/10.1111/boj.12362

Farmer, A. D. (2016). The Legume Information System and The Legume Federation: Working Together for the Legume-Fed. C18. https://pag.confex.com/pag/xxiv/webprogram/Paper21325.html

Foster, I. (2016). Reasoning About Discovery Clouds (D. Kordon Fabrice; Moldt, Ed.; Vol. 9698, pp. 10-Mar). http://link.springer.com/10.1007/978-3-319-39086-4_1

Foster, S., Ian; Chard, Kyle; Tuecke. (2016). The Discovery Cloud: Accelerating and Democratizing Research on a Global Scale. 68–77. https://doi.org/10.1109/IC2E.2016.46

Freese, A. E., Nowlan H. ;. Norris, David C. ;. Loraine. (2016). Integrated genome browser: Visual analytics platform for genomics. 32(14), 2089–2095. https://doi.org/10.1093/bioinformatics/btw069

Fritz-Waters, E. (2016). The iPlant Agave Application Program Interface, High Performance Computing, and You (the COmputationally Competent). W245. https://pag.confex.com/pag/xxiv/webprogram/Paper21735.html

Furfaro, R., Roberto; Linares, Richard; Gaylor, David; Jah, Moriba; Walls. (2016). Resident Space Object Characterization and Behavior Understanding via Machine Learning and Ontology-based Bayesian Networks.

Gardiner, A., Laura-Jayne; Bansept-Basler, Pauline; Olohan, Lisa; Joynson, Ryan; Brenchley, Rachel; Hall, Neil; O’Sullivan, Donal M. ;. Hall. (2016). Mapping-by-sequencing in complex polyploid genomes using genic sequence capture: A case study to map yellow rust resistance in hexaploid wheat. 87(4), 403–419. https://doi.org/10.1111/tpj.13204

Gardiner, J. et al. (2016). Data Management and Analysis Solutions for Maize Predictive Phenomics: A Partnership with the GxE Subgroup of the Genomes to Fields (G2F) Initiative. P0319. https://pag.confex.com/pag/xxiv/webprogram/Paper21167.html

Gill, D., Gunbharpur; Haugen, Riston; Matzner, Steven; Barakat, Abdelali; Siemens. (2016). Effect of Drought on Herbivore-Induced Plant Gene Expression: Population Comparison for Range Limit Inferences. 5(1), 13. https://doi.org/10.3390/plants5010013

Goldsmith, B. J., Gregory R. ;. Morueta-Holme, Naia; Sandel, Brody; Fitz, Eric D. ;. Fitz, Samuel D. ;. Boyle, Brad; Casler, Nathan; Engemann, Kristine; Jørgensen, Peter M. ;. Kraft, Nathan J. B. ;. McGill, Brian; Peet, Robert K. ;. Piel, William H. ;. Spencer, Nick; Svenning, Jens-Christian; Thiers, Barbara M. ;. Violle, Cyrille; Wiser, Susan K. ;. Enquist. (2016). Plant-O-Matic: A dynamic and mobile guide to all plants of the Americas. 7(8), 960–965. https://doi.org/10.1111/2041-210X.12548

Goller, C. C. (2016). Sifting Through Metagenomes using the iPlant Discovery Environment. W558. https://pag.confex.com/pag/xxiv/webprogram/Paper21872.html

Grossman, W., Robert L. ;. Heath, Allison; Murphy, Mark; Patterson, Maria; Wells. (2016a). A Case for Data Commons: Towards Data Science as a Service. http://arxiv.org/abs/1604.02608

Grossman, W., Robert L. ;. Heath, Allison; Murphy, Mark; Patterson, Maria; Wells. (2016b). A Case for Data Commons: Toward Data Science as a Service. 18(5), 20-Oct. https://doi.org/10.1109/MCSE.2016.92

Gunadi, J. J., Andika; Rushton, Paul J. ;. McHale, Leah K. ;. Gutek, Amanda H. ;. Finer. (2016). Characterization of 40 soybean (Glycine max) promoters, isolated from across 5 thematic gene groups. 127(1), 145–160. https://doi.org/10.1007/s11240-016-1038-x

Gupta, T., Shishir K. ;. Bencurova, Elena; Srivastava, Mugdha; Pahlavan, Pirasteh; Balkenhol, Johannes; Dandekar. (2016). Improving Re-annotation of Annotated Eukaryotic Genomes (K.-C. Wong, Ed.; pp. 171–195). http://link.springer.com/10.1007/978-3-319-41279-5_5

Guralnick, L., Robert P. ;. Zermoglio, Paula F. ;. Wieczorek, John; LaFrance, Raphael; Bloom, David; Russell. (2016). The importance of digitized biocollections as a source of trait data and a new VertNet resource. 2016, baw158. https://doi.org/10.1093/database/baw158

Halse-Gramkow, C. H., Morten; Ernst, Madeleine; Rønsted, Nina; Dunn, Robert R. ;. Saslis-Lagoudakis. (2016). Using evolutionary tools to search for novel psychoactive plants. 14(4), 246–255. https://doi.org/10.1017/S1479262116000344

Hamilton, R. S., Eileen P; Kapusta, Aurélie; Huvos, Piroska E; Bidwell, Shelby L; Zafar, Nikhat; Tang, Haibao; Hadjithomas, Michalis; Krishnakumar, Vivek; Badger, Jonathan H; Caler, Elisabet V; Russ, Carsten; Zeng, Qiandong; Fan, Lin; Levin, Joshua Z; Shea, Terrance; Young, Sarah K; Hegarty, Ryan; Daza, Riza; Gujja, Sharvari; Wortman, Jennifer R; Birren, Bruce W; Nusbaum, Chad; Thomas, Jainy; Carey, Clayton M; Pritham, Ellen J; Feschotte, Cédric; Noto, Tomoko; Mochizuki, Kazufumi; Papazyan, Romeo; Taverna, Sean D; Dear, Paul H; Cassidy-Hanley, Donna M; Xiong, Jie; Miao, Wei; Orias, Eduardo; Coyne. (2016). Structure of the germline genome of Tetrahymena thermophila and relationship to the massively rearranged somatic genome. 5, e19090. https://doi.org/10.7554/eLife.19090

Harris, S. (2016). Using DNA Barcoding and Educational Bioinformatics to Create Authentic Research Experiences for Science Students. W556. https://pag.confex.com/pag/xxiv/webprogram/Paper21871.html

Haug-Baltzell, L. M., Asher; Males, Jared R. ;. Morzinski, Katie M. ;. Wu, Ya-Lin; Merchant, Nirav; Lyons, Eric; Close. (2016). High-contrast imaging in the cloud with klipReduce and Findr (J. C. Chiozzi Gianluca; Guzman, Ed.; p. 99130F). https://doi.org/10.1117/12.2234095

Hendre, P. et al. (2016). African Orphan Crops Consortium: A Global Partnership to Address Food and Nutritional Requirements in Africa through Genomics Applications. P1309. https://pag.confex.com/pag/xxiv/webprogram/Paper22498.html

Henzen, L., Christin; Mäs, Stephan; Zander, Franziska; Schroeder, M; Bernard. (2016). Representing research collaborations and linking scientific project results in spatial data infrastructures by provenance information.

Herndon, J. L., Nic; Grau, Emily S; Batra, Iman; Demurjian Jr. ,. Steven A; Vasquez-Gross, Hans A; Staton, Margaret E; Wegrzyn. (2016). CartograTree: Enabling landscape genomics for forest trees. https://peerj.com/preprints/2345

Heyduk, T. C., Karolina; Stephens, Jessica D. ;. Faircloth, Brant C. ;. Glenn. (2016). Targeted DNA Region Re-sequencing (J. L. Aransay Ana M. ;. Lavín Trueba, Ed.; pp. 43–68). http://link.springer.com/10.1007/978-3-319-31350-4_3

Hintsch, K., Johannes; Görling, Carsten; Turowski. (2016). A Review of the Literature on Configuration Management Tools. 71.

Hoopen, P., Petra ten; Walls, Ramona L; Cannon, Ethalinda K. S; Cochrane, Guy; Cole, James; Johnston, Anjanette; Karsch-Mizrachi, Ilene; Yilmaz. (2016). Plant specimen contextual data consensus. 5(1). https://doi.org/10.1093/gigascience/giw002

Hubbard, A. et al. (2016). fRNAkenseq: A Powered-by-iPlant RNA Sequencing Analysis Platform. P0358. https://pag.confex.com/pag/xxiv/webprogram/Paper19675.html

Jaiswal, B., Pankaj; Usadel. (2016). Plant Pathway Databases (D. Edwards, Ed.; Vol. 1374, pp. 71–87). http://link.springer.com/10.1007/978-1-4939-3167-5_4

Johnson, R. (2016). IPlantUK: Creating User Friendly RNA-Seq and Mapping by Sequencing Workflows. P1292. https://pag.confex.com/pag/xxiv/webprogram/Paper22479.html

Joyce, E., Blake L. ;. Haug-Baltzell, Asher; Davey, Sean; Bomhoff, Matthew; Schnable, James C. ;. Lyons. (2016). FractBias: A graphical tool for assessing fractionation bias following polyploidy. btw666. https://doi.org/10.1093/bioinformatics/btw666

Kang, Y. (2016). An investigation of pelagophyte ecology.

Kelly, T., Derek; Vatsa, Avimanyou; Mayham, Wade; Kazic. (2016a). Extracting complex lesion phenotypes in Zea mays. 27(1), 145–156. https://doi.org/10.1007/s00138-015-0718-6

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