2015 Publications
Albert, C., Aurélie; Auffret, Alistair G. ;. Cosyns, Eric; Cousins, Sara A. O. ;. D’hondt, Bram; Eichberg, Carsten; Eycott, Amy E. ;. Heinken, Thilo; Hoffmann, Maurice; Jaroszewicz, Bogdan; Malo, Juan E. ;. Mårell, Anders; Mouissie, Maarten; Pakeman, Robin J. ;. Picard, Mélanie; Plue, Jan; Poschlod, Peter; Provoost, Sam; Schulze, Kiowa Alraune; Baltzinger. (2015a). Seed dispersal by ungulates as an ecological filter: A trait-based meta-analysis. 124(9), 1109–1120. https://doi.org/10.1111/oik.02512
Albert, C., Aurélie; Mårell, Anders; Picard, Mélanie; Baltzinger. (2015b). Using basic plant traits to predict ungulate seed dispersal potential. 38(5), 440–449. https://doi.org/10.1111/ecog.00709
Allahverdiyeva, M., Yagut; Battchikova, Natalia; Brosché, Mikael; Fujii, Hiroaki; Kangasjärvi, Saijaliisa; Mulo, Paula; Mähönen, Ari Pekka; Nieminen, Kaisa; Overmyer, Kirk; Salojärvi, Jarkko; Wrzaczek. (2015). Integration of photosynthesis, development and stress as an opportunity for plant biology. 208(3), 647–655. https://doi.org/10.1111/nph.13549
Alvi, A. V., Zain A. ;. Chu, Tin-Chun; Schawaroch, Valerie; Klaus. (2015). Genomic and expression analysis of transition proteins in Drosophila. 5(3), e1178518. https://doi.org/10.1080/21565562.2016.1178518
Ananthakrishnan, S., Rachana; Chard, Kyle; Foster, Ian; Tuecke. (2015). Globus platform-as-a-service for collaborative science applications. 27(2), 290–305.
Antoni, A., & Kutztown, P. (2015). A Bioinformatics Approach to Systemic Lupus Erythematosus and Autoimmunity. https://www.aai.org/AAISite/media/Education/HST/Archive/2015_Seifert_Final.pdf
Antoni, P., Angelika; Kutztown. (2015). A Bioinformatics Approach to Systemic Lupus Erythematosus and Autoimmunity.
Bailey, D. (2015). Using iPlant Tools and Plastome Sequencing As a Springboard into Comparative Genomics: Plastome Organization and Sequence for the Mimosoid Legume Leucaena trichandra. https://pag.confex.com/pag/xxiii/webprogram/Paper17194.html
Batllori, M. A., Enric; Ackerly, David D; Moritz. (2015). A minimal model of fire-vegetation feedbacks and disturbance stochasticity generates alternative stable states in grassland–shrubland–woodland systems. 10(3), 34018. https://doi.org/10.1088/1748-9326/10/3/034018
Blonder, B. J., Benjamin; Nogués-Bravo, David; Borregaard, Michael K. ;. Donoghue, John C. ;. Jørgensen, Peter M. ;. Kraft, Nathan J. B. ;. Lessard, Jean-Philippe; Morueta-Holme, Naia; Sandel, Brody; Svenning, Jens-Christian; Violle, Cyrille; Rahbek, Carsten; Enquist. (2015). Linking environmental filtering and disequilibrium to biogeography with a community climate framework. 96(4), 972–985. https://doi.org/10.1890/14-0589.1
Boyd, C., Kelly; Highland, Emma; Misch, Amanda; Hu, Amber; Reddy, Sushma; Putonti. (2015). Finding function in the unknown. 1098–1099. https://doi.org/10.1109/BIBM.2015.7359834
Brusslan, J. A. (2015). Large Dataset Analysis for Undergraduates: Discovery Environment, RNA-Seq and Leaf Senescence in< em> Arabidopsis thaliana</em>(Green Line). https://pag.confex.com/pag/xxiii/webprogram/Paper17290.html
Buckner, B. (2015). Introducing Undergraduate Students to Gene and Genome Structure through Gene Annotation. https://pag.confex.com/pag/xxiii/webprogram/Paper17143.html
Buonaccorsi, V. (2015). Undergraduate Genomics Research through GCAT-SEEK: The Genome Consortium for Active Teaching Using Next-Generation Sequencing. https://pag.confex.com/pag/xxiii/webprogram/Paper17140.html
Burnette, J. (2015a). DNA Subway Yellow and Blue Lines: TEs, Gene Discovery and DNA Barcoding. https://pag.confex.com/pag/xxiii/webprogram/Paper17293.html
Burnette, J. (2015b). Transposable Elements, Gene Discovery, and DNA Barcoding (Yellow and Blue Lines). https://pag.confex.com/pag/xxiii/webprogram/Paper17292.html
Campbell, H., Malachy T. ;. Knecht, Avi C. ;. Berger, Bettina; Brien, Chris J. ;. Wang, Dong; Walia. (2015). Integrating Image-Based Phenomics and Association Analysis to Dissect the Genetic Architecture of Temporal Salinity Responses in Rice. 168(4), 1476–1489. https://doi.org/10.1104/pp.15.00450
Cannon, J., Steven B. ;. McKain, Michael R. ;. Harkess, Alex; Nelson, Matthew N. ;. Dash, Sudhansu; Deyholos, Michael K. ;. Peng, Yanhui; Joyce, Blake; Stewart, Charles N. ;. Rolf, Megan; Kutchan, Toni; Tan, Xuemei; Chen, Cui; Zhang, Yong; Carpenter, Eric; Wong, Gane Ka-Shu; Doyle, Jeff J. ;. Leebens-Mack. (2015). Multiple Polyploidy Events in the Early Radiation of Nodulating and Nonnodulating Legumes. 32(1), 193–210. https://doi.org/10.1093/molbev/msu296
Carson, J. et al. (2015). Leveraging iPlant Cyberinfrastructure for a New Data-Driven Research Community. https://pag.confex.com/pag/xxiii/webprogram/Paper15848.html
Chamala, P. S., Srikar; García, Nicolás; Godden, Grant T. ;. Krishnakumar, Vivek; Jordon-Thaden, Ingrid E. ;. Smet, Riet De; Barbazuk, W. Brad; Soltis, Douglas E. ;. Soltis. (2015). MarkerMiner 1.0: A New Application for Phylogenetic Marker Development Using Angiosperm Transcriptomes. 3(4), 1400115. https://doi.org/10.3732/apps.1400115
Chard, I., Ryan; Chard, Kyle; Bubendorfer, Kris; Lacinski, Lukasz; Madduri, Ravi; Foster. (2015). Cost-Aware Cloud Provisioning. 136–144. https://doi.org/10.1109/eScience.2015.67
Charnigo R, T. K. (2015). Parallel Computing in Genome-Wide Association Studies. 6(1). https://doi.org/10.4172/2155-6180.1000e131
Cheng, C.-Y. E. F. Vi. K. M. K. S. K. B. D. R. M. H. S. M. J. S. W. M. R. D. S. C. J. S. A. K. G. M. J. R. M. M. V. C. D. T. (2015). Data Integration for the Plant Research Community: The Arabidopsis Information Portal. https://pag.confex.com/pag/xxiii/webprogram/Paper16112.html
Chougule, K. (2015). Flash Demo: Atmosphere Cloud Computing—Applied to Visualizing RNA-Seq Data. https://pag.confex.com/pag/xxiii/webprogram/Paper17300.html
Cottingham, R. W. et al. (2015). The DOE Systems Biology Knowledgebase: Progress Toward a System for Collaborative and Reproducible Inference and Modeling of Biological Function in Plant Research. https://pag.confex.com/pag/xxiii/webprogram/Paper16317.html
Council, N. R. others. (2015). Enhancing the effectiveness of team science.
Crivelli, S. T. W. C., Silvia; Dooley, Rion; Holmes, Raquell; Mock. (2015). Creating a gateway that enables large-scale science coopetition: LARGE-SCALE SCIENCE COOPETITION. 27(2), 446–457. https://doi.org/10.1002/cpe.3270
da Silva, M., Rafael Ferreira; Juve, Gideon; Rynge, Mats; Deelman, Ewa; Livny. (2015). Online Task Resource Consumption Prediction for Scientific Workflows. 25(3), 1541003. https://doi.org/10.1142/S0129626415410030
Darwish, N. W., Omar; Shahan, Rachel; Liu, Zhongchi; Slovin, Janet P; Alkharouf. (2015). Re-annotation of the woodland strawberry (Fragaria vesca) genome. 16(1), 29. https://doi.org/10.1186/s12864-015-1221-1
Das, A., Abhiram; Schneider, Hannah; Burridge, James; Ascanio, Ana Karine Martinez; Wojciechowski, Tobias; Topp, Christopher N. ;. Lynch, Jonathan P. ;. Weitz, Joshua S. ;. Bucksch. (2015). Digital imaging of root traits (DIRT): A high-throughput computing and collaboration platform for field-based root phenomics. 11(1), 51. https://doi.org/10.1186/s13007-015-0093-3
Deans, P., Andrew R. ;. Lewis, Suzanna E. ;. Huala, Eva; Anzaldo, Salvatore S. ;. Ashburner, Michael; Balhoff, James P. ;. Blackburn, David C. ;. Blake, Judith A. ;. Burleigh, J. Gordon; Chanet, Bruno; Cooper, Laurel D. ;. Courtot, Mélanie; Csösz, Sándor; Cui, Hong; Dahdul, Wasila; Das, Sandip; Dececchi, T. Alexander; Dettai, Agnes; Diogo, Rui; Druzinsky, Robert E. ;. Dumontier, Michel; Franz, Nico M. ;. Friedrich, Frank; Gkoutos, George V. ;. Haendel, Melissa; Harmon, Luke J. ;. Hayamizu, Terry F. ;. He, Yongqun; Hines, Heather M. ;. Ibrahim, Nizar; Jackson, Laura M. ;. Jaiswal, Pankaj; James-Zorn, Christina; Köhler, Sebastian; Lecointre, Guillaume; Lapp, Hilmar; Lawrence, Carolyn J. ;. Le Novère, Nicolas; Lundberg, John G. ;. Macklin, James; Mast, Austin R. ;. Midford, Peter E. ;. Mikó, István; Mungall, Christopher J. ;. Oellrich, Anika; Osumi-Sutherland, David; Parkinson, Helen; Ramírez, Martín J. ;. Richter, Stefan; Robinson, Peter N. ;. Ruttenberg, Alan; Schulz, Katja S. ;. Segerdell, Erik; Seltmann, Katja C. ;. Sharkey, Michael J. ;. Smith, Aaron D. ;. Smith, Barry; Specht, Chelsea D. ;. Squires, R. Burke; Thacker, Robert W. ;. Thessen, Anne; Fernandez-Triana, Jose; Vihinen, Mauno; Vize, Peter D. ;. Vogt, Lars; Wall, Christine E. ;. Walls, Ramona L. ;. Westerfeld, Monte; Wharton, Robert A. ;. Wirkner, Christian S. ;. Woolley, James B. ;. Yoder, Matthew J. ;. Zorn, Aaron M. ;. Mabee. (2015). Finding Our Way through Phenotypes. 13(1), e1002033. https://doi.org/10.1371/journal.pbio.1002033
DeBarry, J. (2015). Flash Demo: Secure, Collaborative, Management of Your Life Sciences Data with the Data Store. https://pag.confex.com/pag/xxiii/webprogram/Paper17299.html
Deck, J., John; Guralnick, Robert; Walls, Ramona; Blum, Stanley; Haendel, Melissa; Matsunaga, Andréa; Wieczorek. (2015). Meeting report: Identifying practical applications of ontologies for biodiversity informatics. 10(1), 25. https://doi.org/10.1186/s40793-015-0014-0
Deng, D. E., Jia-bin; Drew, Bryan T. ;. Mavrodiev, Evgeny V. ;. Gitzendanner, Matthew A. ;. Soltis, Pamela S. ;. Soltis. (2015). Phylogeny, divergence times, and historical biogeography of the angiosperm family Saxifragaceae. 83, 86–98. https://doi.org/10.1016/j.ympev.2014.11.011
Devisetty, U. K. (2015). A Hybrid Approach to Assemble and Annotate the Brassica rapa Transcriptome in the Cloud through the iPlant Collaborative and XSEDE. https://pag.confex.com/pag/xxiii/webprogram/Paper17195.html
Dhanapal, M., Arun Prabhu; Govindaraj. (2015). Unlimited thirst for genome sequencing, data interpretation, and database usage in genomic era: The road towards fast-track crop plant improvement. 2015.
Docherty, R. E., Kathryn M. ;. Borton, Hannah M. ;. Espinosa, Noelle; Gebhardt, Martha; Gil-Loaiza, Juliana; Gutknecht, Jessica L. M. ;. Maes, Patrick W. ;. Mott, Brendon M. ;. Parnell, John Jacob; Purdy, Gayle; Rodrigues, Pedro A. P. ;. Stanish, Lee F. ;. Walser, Olivia N. ;. Gallery. (2015). Key Edaphic Properties Largely Explain Temporal and Geographic Variation in Soil Microbial Communities across Four Biomes. 10(11), e0135352. https://doi.org/10.1371/journal.pone.0135352
Dooley, M. R., Rion; Hanlon. (2015). Recipes 2.0: Building for today and tomorrow: RECIPES 2.0: BUILDING FOR TODAY AND TOMORROW. 27(2), 258–270. https://doi.org/10.1002/cpe.3285
Dudhagara, R., Pravin; Bhavsar, Sunil; Bhagat, Chintan; Ghelani, Anjana; Bhatt, Shreyas; Patel. (2015). Web Resources for Metagenomics Studies. 13(5), 296–303. https://doi.org/10.1016/j.gpb.2015.10.003
Dvorak, J. et al. (2015). BAC-Based Sequencing of the Aegilops tauschii Genome. https://pag.confex.com/pag/xxiii/webprogram/Paper13960.html
Eastmond, J. M., Peter J. ;. Astley, Holly M. ;. Parsley, Kate; Aubry, Sylvain; Williams, Ben P. ;. Menard, Guillaume N. ;. Craddock, Christian P. ;. Nunes-Nesi, Adriano; Fernie, Alisdair R. ;. Hibberd. (2015). Arabidopsis uses two gluconeogenic gateways for organic acids to fuel seedling establishment. 6(1), 6659. https://doi.org/10.1038/ncomms7659
Engemann, J.-C., Kristine; Enquist, Brian J. ;. Sandel, Brody; Boyle, Brad; Jørgensen, Peter M. ;. Morueta-Holme, Naia; Peet, Robert K. ;. Violle, Cyrille; Svenning. (2015). Limited sampling hampers “big data” estimation of species richness in a tropical biodiversity hotspot. 5(3), 807–820. https://doi.org/10.1002/ece3.1405
Etemadpour, A., Ronak; Bomhoff, Matthew; Lyons, Eric; Murray, Paul; Forbes. (2015). Designing and evaluating scientific workflows for big data interactions. 1–8.
Fahlgren, I., Noah; Gehan, Malia A; Baxter. (2015). Lights, camera, action: High-throughput plant phenotyping is ready for a close-up. 24, 93–99. https://doi.org/10.1016/j.pbi.2015.02.006
Fischer, C. A., Jeremy; Tuecke, Steven; Foster, Ian; Stewart. (2015). Jetstream: A distributed cloud infrastructure for underresourced higher education communities. 53–61.
Flis, A. J., Anna; Fernández, Aurora Piñas; Zielinski, Tomasz; Mengin, Virginie; Sulpice, Ronan; Stratford, Kevin; Hume, Alastair; Pokhilko, Alexandra; Southern, Megan M. ;. Seaton, Daniel D. ;. McWatters, Harriet G. ;. Stitt, Mark; Halliday, Karen J. ;. Millar. (2015). Defining the robust behaviour of the plant clock gene circuit with absolute RNA timeseries and open infrastructure. 5(10), 150042. https://doi.org/10.1098/rsob.150042
Fox, A., Geoffrey C. ;. Qiu, Judy; Kamburugamuve, Supun; Jha, Shantenu; Luckow. (2015). HPC-ABDS High Performance Computing Enhanced Apache Big Data Stack. 1057–1066. https://doi.org/10.1109/CCGrid.2015.122
Gardiner, A., Laura-Jayne; Quinton-Tulloch, Mark; Olohan, Lisa; Price, Jonathan; Hall, Neil; Hall. (2015). A genome-wide survey of DNA methylation in hexaploid wheat. 16(1), 273. https://doi.org/10.1186/s13059-015-0838-3
Gardiner, J. D. C. C. J. L.-D. (2015). Identification and Development of Data Standards for Maize Field Phenotypic Measurements: Working with the GxE Subgroup of ht eGenomes2Fields Initiative. https://pag.confex.com/pag/xxiii/webprogram/Paper15771.html
Gesing, A., Sandra; Dooley, Rion; Pierce, Marlon; Kruger, Jens; Grunzke, Richard; Herres-Pawlis, Sonja; Hoffmann. (2015). Science gateways—Leveraging modeling and simulations in HPC infrastructures via increased usability. 19–26. https://doi.org/10.1109/HPCSim.2015.7237017
Gesing, I., Sandra; Connor, Thomas Richard; Taylor. (2015). Genomics and Biological Big Data: Facing Current and Future Challenges around Data and Software Sharing and Reproducibility. http://arxiv.org/abs/1511.02689
Goggin, C. N., Fiona L; Lorence, Argelia; Topp. (2015). Applying high-throughput phenotyping to plant–insect interactions: Picturing more resistant crops. 9, 69–76. https://doi.org/10.1016/j.cois.2015.03.002
González, C., Esther M. ;. Larrainzar, Estíbaliz; Marino, Daniel; Wienkoop, Stefanie; Gil-Quintana, Erena; Arrese-Igor. (2015). Physiological Responses of N2-Fixing Legumes to Water Limitation (L.-S. P. Sulieman Saad; Tran, Ed.; p. May-33). http://link.springer.com/10.1007/978-3-319-06212-9_2
Goring, J. W., Simon; Dawson, Andria; Simpson, Gavin L. ;. Ram, Karthik; Graham, Russ W. ;. Grimm, Eric C. ;. Williams. (2015). neotoma: A Programmatic Interface to the Neotoma Paleoecological Database. 1. https://doi.org/10.5334/oq.ab
Goscinski, P., Andrzej; Church. (2015). Clouds for Masses—Toward Ubiquitous and Transparent Clouds. 1141–1148. https://doi.org/10.1109/CLOUD.2015.168
Gray, K. others, John; Burdo, Brett; Goetting-Minesky, M; Wittler, Bettina; Hunt, Matthew; Li, Tai; Velliquette, David; Thomas, Julie; Agarwal, Tina; Key. (2015). Protocol for the generation of a transcription factor open reading frame collection (TFome). 5(15), e15.
Guralnick, R., Robert P. ;. Cellinese, Nico; Deck, John; Pyle, Richard L. ;. Kunze, John; Penev, Lyubomir; Walls, Ramona; Hagedorn, Gregor; Agosti, Donat; Wieczorek, John; Catapano, Terry; Page. (2015). Community Next Steps for Making Globally Unique Identifiers Work for Biocollections Data. 494, 133–154. https://doi.org/10.3897/zookeys.494.9352
Hanlon, E., Matthew R. ;. Vaughn, Matthew; Mock, Stephen; Dooley, Rion; Moreira, Walter; Stubbs, Joe; Town, Chris; Miller, Jason; Krishnakumar, Vivek; Ferlanti, Erik; Pence. (2015). Araport: An application platform for data discovery: Araport: An application platform for data discovery. 27(16), 4412–4422. https://doi.org/10.1002/cpe.3542
Harper, L. et al. (2015). An Ontology Approach to Comparative Phenomics in the Plants: Arabidopsis, Tomato, Maize, Rice, Soybean and Medicago. https://pag.confex.com/pag/xxiii/webprogram/Paper15793.html
Hart, D., Michael; Rast, Richard; Jefferies, Stuart; Hope. (2015). Resolved observations of geostationary satellites from the 6.5 m MMT.
Haug-Baltzell, E., Asher; Jarvis, Erich D. ;. McCarthy, Fiona M. ;. Lyons. (2015). Identification of dopamine receptors across the extant avian family tree and analysis with other clades uncovers a polyploid expansion among vertebrates. 9. https://doi.org/10.3389/fnins.2015.00361
Haug-Baltzell, E. J. A., , Asher K., Eric Lyons, Fiona McCarthy; Dopamine. (2015). Receptors DRD1a and DRD1b Arise from an Ancient Vertebrate Whole Genome Duplication. https://pag.confex.com/pag/xxiii/webprogram/Paper16214.html
Heiland, V., Randy; Koranda, Scott; Marru, Suresh; Pierce, Marlon; Welch. (2015). Authentication and Authorization Considerations for a Multi-tenant Service. 29–35. https://doi.org/10.1145/2753524.2753534
Horvath, M., David; Anderson, James V; Chao, Wun S; Foley, Michael E; Doğramaci. (2015). Leafy Spurge Genomics: A Model Perennial Weed to Investigate Development, Stress Responses, and Invasiveness (pp. 63–78).
Horvath, S. A., David P. ;. Hansen, Stephanie A. ;. Moriles-Miller, Janet P. ;. Pierik, Ronald; Yan, Changhui; Clay, David E. ;. Scheffler, Brian; Clay. (2015). RNAseq reveals weed-induced PIF3-like as a candidate target to manipulate weed stress response in soybean. 207(1), 196–210. https://doi.org/10.1111/nph.13351
Huala, E. et al. (2015). Flash Talk: An Ontology Approach to Comparative Phenomics in Plants. https://pag.confex.com/pag/xxiii/webprogram/Paper17309.html
Huang, J. H., Xiuzhen; Jennings, Steven F; Bruce, Barry; Buchan, Alison; Cai, Liming; Chen, Pengyin; Cramer, Carole L; Guan, Weihua; Hilgert, Uwe KK; Jiang, Hongmei; Li, Zenglu; McClure, Gail; McMullen, Donald F; Nanduri, Bindu; Perkins, Andy; Rekepalli, Bhanu; Salem, Saeed; Specker, Jennifer; Walker, Karl; Wunsch, Donald; Xiong, Donghai; Zhang, Shuzhong; Zhang, Yu; Zhao, Zhongming; Moore. (2015). Big data—A 21st century science Maginot Line? No-boundary thinking: Shifting from the big data paradigm. 8(1), 7. https://doi.org/10.1186/s13040-015-0037-5
Huck, K., Patrick; Jain, Anubhav; Gunter, Dan; Winston, Donald; Persson. (2015). A Community Contribution Framework for Sharing Materials Data with Materials Project. 535–541. https://doi.org/10.1109/eScience.2015.75
Hurwitz, M. B., Bonnie L; Brum, Jennifer R; Sullivan. (2015). Depth-stratified functional and taxonomic niche specialization in the ‘core’ and ‘flexible’ Pacific Ocean Virome. 9(2), 472–484. https://doi.org/10.1038/ismej.2014.143
James, M., Doug; McLay, Robert; Liu, Si; Evans, R. Todd; Barth, William L. ;. Lamas-Linares, Antia; Budiardja, Reuben; Fahey. (2015). Tales from the trenches: Can user support tools make a difference? 11-Jan. https://doi.org/10.1145/2834996.2834998
Jonquet, P., Clement; Dzalé-Yeumo, Esther; Arnaud, Elizabeth; Larmande. (2015). AgroPortal: A proposition for ontology-based services in the agronomic domain.
Jordan, D., Christopher; Walling, David; Xu, Weijia; Mock, Stephen A. ;. Gaffney, Niall; Stanzione. (2015). Wrangler’s user environment: A software framework for management of data-intensive computing system. 2479–2486. https://doi.org/10.1109/BigData.2015.7364043
Kociumaka, T., Tomasz; Pissis, Solon P; Radoszewski, Jakub; Rytter, Wojciech; Waleń. (2015). Fast algorithm for partial covers in words. 73(1), 217–233.
Köhl, J., Karin; Gremmels. (2015). A software tool for the input and management of phenotypic data using personal digital assistants and other mobile devices. 11(1), 25. https://doi.org/10.1186/s13007-015-0069-3
Krampis, C., Konstantinos; Wultsch. (2015). A Review of Cloud Computing Bioinformatics Solutions for Next-Gen Sequencing Data Analysis and Research. 2(1). https://doi.org/10.1515/mngs-2015-0003
Krishnakumar, C. D., Vivek; Hanlon, Matthew R. ;. Contrino, Sergio; Ferlanti, Erik S. ;. Karamycheva, Svetlana; Kim, Maria; Rosen, Benjamin D. ;. Cheng, Chia-Yi; Moreira, Walter; Mock, Stephen A. ;. Stubbs, Joseph; Sullivan, Julie M. ;. Krampis, Konstantinos; Miller, Jason R. ;. Micklem, Gos; Vaughn, Matthew; Town. (2015). Araport: The Arabidopsis Information Portal. 43(D1), D1003–D1009. https://doi.org/10.1093/nar/gku1200
Lapatas, M. V., Vasileios; Stefanidakis, Michalis; Jimenez, Rafael C. ;. Via, Allegra; Schneider. (2015). Data integration in biological research: An overview. 22(1), 9. https://doi.org/10.1186/s40709-015-0032-5
Law, M., MeiYee; Childs, Kevin L. ;. Campbell, Michael S. ;. Stein, Joshua C. ;. Olson, Andrew J. ;. Holt, Carson; Panchy, Nicholas; Lei, Jikai; Jiao, Dian; Andorf, Carson M. ;. Lawrence, Carolyn J. ;. Ware, Doreen; Shiu, Shin-Han; Sun, Yanni; Jiang, Ning; Yandell. (2015). Automated Update, Revision, and Quality Control of the Maize Genome Annotations Using MAKER-P Improves the B73 RefGen_v3 Gene Models and Identifies New Genes. 167(1), 25–39. https://doi.org/10.1104/pp.114.245027
Lewis, J. H., Russell; Hartman. (2015). Accordion: Multi-scale recipes for adaptive detection of duplication.
Li, J., Jilong; Hou, Jie; Sun, Lin; Wilkins, Jordan Maximillian; Lu, Yuan; Niederhuth, Chad E. ;. Merideth, Benjamin Ryan; Mawhinney, Thomas P. ;. Mossine, Valeri V. ;. Greenlief, C. Michael; Walker, John C. ;. Folk, William R. ;. Hannink, Mark; Lubahn, Dennis B. ;. Birchler, James A. ;. Cheng. (2015). From Gigabyte to Kilobyte: A Bioinformatics Protocol for Mining Large RNA-Seq Transcriptomics Data. 10(4), e0125000. https://doi.org/10.1371/journal.pone.0125000
Li, N. M., Qing; Song, Jawon; West, Patrick T. ;. Zynda, Greg; Eichten, Steven R. ;. Vaughn, Matthew W. ;. Springer. (2015). Examining the Causes and Consequences of Context-Specific Differential DNA Methylation in Maize. 168(4), 1262–1274. https://doi.org/10.1104/pp.15.00052
Lin, D. J., Tian; Lashbrook, Coralie C. ;. Cho, Sung Ki; Butler, Nathaniel M. ;. Sharma, Pooja; Muppirala, Usha; Severin, Andrew J. ;. Hannapel. (2015). Transcriptional analysis of phloem-associated cells of potato. 16(1), 665. https://doi.org/10.1186/s12864-015-1844-2
Liu, A., Lijun; Ramsay, Trevor; Zinkgraf, Matthew; Sundell, David; Street, Nathaniel Robert; Filkov, Vladimir; Groover. (2015). A resource for characterizing genome-wide binding and putative target genes of transcription factors expressed during secondary growth and wood formation in Populus. 82(5), 887–898. https://doi.org/10.1111/tpj.12850
Liu, G., Hongjun; Niu, Yongchao; Gonzalez-Portilla, Pedro J. ;. Zhou, Huangkai; Wang, Liya; Zuo, Tao; Qin, Cheng; Tai, Shuaishuai; Jansen, Constantin; Shen, Yaou; Lin, Haijian; Lee, Michael; Ware, Doreen; Zhang, Zhiming; Lübberstedt, Thomas; Pan. (2015). An ultra-high-density map as a community resource for discerning the genetic basis of quantitative traits in maize. 16(1), 1078. https://doi.org/10.1186/s12864-015-2242-5
Liu, Y. (2015, January 12). Large-Scale Next-Generation Resequencing of Soybean Germplasm for Trait Discovery.
Lushbough, R., Carol M. ;. Gnimpieba, Etienne Z. ;. Dooley. (2015). Life science data analysis workflow development using the bioextract server leveraging the iPlant collaborative cyberinfrastructure: BIOEXTRACT SERVER WORKFLOWS LEVERAGING IPLANT COLLABORATIVE. 27(2), 408–419. https://doi.org/10.1002/cpe.3237
Lyu, X.-G., Ming-Ju Amy; Gowik, Udo; Kelly, Steve; Covshoff, Sarah; Mallmann, Julia; Westhoff, Peter; Hibberd, Julian M. ;. Stata, Matt; Sage, Rowan F. ;. Lu, Haorong; Wei, Xiaofeng; Wong, Gane Ka-Shu; Zhu. (2015). RNA-Seq based phylogeny recapitulates previous phylogeny of the genus Flaveria (Asteraceae) with some modifications. 15(1), 116. https://doi.org/10.1186/s12862-015-0399-9
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