2013 Publications

Amborella Genome Project; Albert, L., et al. (2013). The Amborella Genome and the Evolution of Flowering Plants. 342(6165), 1241089–1241089. https://doi.org/10.1126/science.1241089

Bayzid, T., Md Shamsuzzoha; Warnow. (2013). Naive binning improves phylogenomic analyses. 29(18), 2277–2284. https://doi.org/10.1093/bioinformatics/btt394

Beaulieu, M. J., Jeremy M. ;. Donoghue. (2013a). FRUIT EVOLUTION AND DIVERSIFICATION IN CAMPANULID ANGIOSPERMS: CAMPANULID FRUIT EVOLUTION. 67(11), 3132–3144. https://doi.org/10.1111/evo.12180

Beaulieu, M. J., Jeremy M. ;. O’Meara, Brian C. ;. Donoghue. (2013b). Identifying Hidden Rate Changes in the Evolution of a Binary Morphological Character: The Evolution of Plant Habit in Campanulid Angiosperms. 62(5), 725–737. https://doi.org/10.1093/sysbio/syt034

Boyle, B. J., Brad; Hopkins, Nicole; Lu, Zhenyuan; Raygoza Garay, Juan Antonio; Mozzherin, Dmitry; Rees, Tony; Matasci, Naim; Narro, Martha L; Piel, William H; Mckay, Sheldon J; Lowry, Sonya; Freeland, Chris; Peet, Robert K; Enquist. (2013). The taxonomic name resolution service: An online tool for automated standardization of plant names. 14(1), 16. https://doi.org/10.1186/1471-2105-14-16

Burleigh, M., Gordon; Alphonse, Kenzley; Alverson, Andrew J; Bik, Holly M; Blank, Carrine; Cirranello, Andrea L; Cui, Hong; Daly, Marymegan; Dietterich, Thomas G; Gasparich, Gail; Irvine, Jed; Julius, Matthew; Kaufman, Seth; Law, Edith; Liu, Jing; Moore, Lisa; O’Leary, Maureen A; Passarotti, Maria; Ranade, Sonali; Simmons, Nancy B; Stevenson, Dennis W. ;. Thacker, Robert W; Theriot, Edward C; Todorovic, Sinisa; Velazco, Paúl M. ;. Walls, Ramona L; Wolfe, Joanna M; Yu. (2013). Next-generation phenomics for the Tree of Life. https://dx.doi.org/10.1371%2Fcurrents.tol.085c713acafc8711b2ff7010a4b03733

Busov, V. (2013). The Promise of Genetics and Beyond. 19(2), 107–128.

Chamberlain, E., Scott A. ;. Szöcs. (2013). taxize: Taxonomic search and retrieval in R. 2, 191. https://doi.org/10.12688/f1000research.2-191.v2

Chen, D., Eric CH; Najar, Carlos Fernando Buen Abad; Zheng, Chunfang; Brandts, Alex; Lyons, Eric; Tang, Haibao; Carretero-Paulet, Lorenzo; Albert, Victor A; Sankoff. (2013). The dynamics of functional classes of plant genes in rediploidized ancient polyploids. 14, S19.

Chen, X., Hao; Wang. (2013). CrusView: A Java-Based Visualization Platform for Comparative Genomics Analyses in Brassicaceae Species. 163(1), 354–362. https://doi.org/10.1104/pp.113.219444

Cheung, W.-C., Alice Y. ;. Palanivelu, Ravi; Tang, Wei-Hua; Xue, Hong-Wei; Yang. (2013). Pollen and Plant Reproduction Biology: Blooming from East to West. 6(4), 995–997. https://doi.org/10.1093/mp/sst108

Christou, J., Michalis; Flouri, Tomáš; Iliopoulos, Costas S. ;. Janoušek, Jan; Melichar, Bořivoj; Pissis, Solon P. ;. Žďárek. (2013). Tree template matching in unranked ordered trees. 20, 51–60. https://doi.org/10.1016/j.jda.2013.02.001

Crochemore, T., Maxime; Iliopoulos, Costas S; Kociumaka, Tomasz; Kubica, Marcin; Langiu, Alessio; Pissis, Solon P; Radoszewski, Jakub; Rytter, Wojciech; Waleń. (2013a). Order-preserving incomplete suffix trees and order-preserving indexes. 84–95.

Crochemore, T., Maxime; Iliopoulos, Costas S. ;. Kociumaka, Tomasz; Kubica, Marcin; Langiu, Alessio; Pissis, Solon P. ;. Radoszewski, Jakub; Rytter, Wojciech; Walen. (2013b). Order-Preserving Suffix Trees and Their Algorithmic Applications. http://arxiv.org/abs/1303.6872

Deck, J., John; Barker, Katharine; Beaman, Reed; Buttigieg, Pier Luigi; Dröge, Gabriele; Guralnick, Robert; Miller, Chuck; Tuama, Éamonn Ó; Murrell, Zack; Parr, Cynthia; Robbins, Bob; Schigel, Dmitry; Stucky, Brian; Walls, Ramona; Wieczorek, John; Morrison, Norman; Wooley. (2013). Clarifying Concepts and Terms in Biodiversity Informatics. 8(2), 352–359. https://doi.org/10.4056/sigs.3907833

Del Rio, C., Nicholas; Villanueva-Rosales, Natalia; Pennington, Deana; Benedict, Karl; Stewart, Aimee; Grady. (2013). Elseweb meets sadi: Supporting data-to-model integration for biodiversity forecasting.

Dhondt, D., Stijn; Wuyts, Nathalie; Inzé. (2013). Cell to whole-plant phenotyping: The best is yet to come. 18(8), 428–439. https://doi.org/10.1016/j.tplants.2013.04.008

Eichten, N. M., Steven R. ;. Vaughn, Matthew W. ;. Hermanson, Peter J. ;. Springer. (2013). Variation in DNA Methylation Patterns is More Common among Maize Inbreds than among Tissues. 6(2), 0. https://doi.org/10.3835/plantgenome2012.06.0009

Eichten, P. others, Steven R; Briskine, Roman; Song, Jawon; Li, Qing; Swanson-Wagner, Ruth; Hermanson, Peter J; Waters, Amanda J; Starr, Evan; West, Patrick T; Tiffin. (2013). Epigenetic and genetic influences on DNA methylation variation in maize populations. 25(8), 2783–2797.

Eichten, S. R. (2013). Identification and characterization of DNA methylation variation within maize.

Fick, B. S., R. H. J. ;. Fedorov, D. ;. Roeder, A. H. K. ;. Manjunath. (2013). Simultaneous cell tracking and image alignment in 3D CLSM imagery of growing Arabidopsis thaliana sepals. 914–917. https://doi.org/10.1109/ISBI.2013.6556624

Flouri, A., Tomáš; Kobert, Kassian; Pissis, Solon P; Stamatakis. (2013). An optimal algorithm for computing all subtree repeats in trees. 269–282.

Flouri, W., Tomáš; Iliopoulos, Costas S; Kociumaka, Tomasz; Pissis, Solon P; Puglisi, Simon J; Smyth, William F; Tyczyński. (2013). Enhanced string covering. 506, 102–114.

Fritz, J. M., E. R. ;. Koltes, J. E. ;. Reecy. (2013). Identification of SNPs in Water Buffalo using next generation sequencing data.

Frousios, S., Kimon; Iliopoulos, Costas S. ;. Tischler, German; Kossida, Sophia; Pissis, Solon P. ;. Arhondakis. (2013). Transcriptome map of mouse isochores in embryonic and neonatal cortex. 101(2), 120–124. https://doi.org/10.1016/j.ygeno.2012.11.006

Galbraith, S. A. G. Q. C. J. N.-Z. D. (2013). Gene Exression in Inbred and Hybrid Mice, Young and Old.

Gessler, J., Damian DG; Bulka, Blazej; Sirin, Evren; Vasquez-Gross, Hans; Yu, John; Wegrzyn. (2013). IPlant SSWAP (Simple Semantic Web Architecture and Protocol) enables semantic pipelines for biodiversity. 101.

Gessler, T., Damian DG; Joslyn, Cliff; Verspoor, Karin; Critchlow. (2013). A posteriori ontology engineering for data-driven science.

Gnimpieba, C. M., Etienne Z; Anderson, Brent S; Chango, Abalo; Lushbough. (2013a). RESTful API in life science research systems and data integration challenges: Linking metabolic pathway, metabolic network, gene and publication. 10, 1196–1199.

Gnimpieba, C. M., Etienne Z; Jennewein, Douglas; Fuhrman, Luke; Lushbough. (2013b). Multidisciplinarity in Knowledge Transmision Management System (KTMS) evaluation. 238.

Gnimpieba, C. M., Etienne Z. ;. Jennewein, Douglas; Fuhrman, Luke; Lushbough. (2013c). Bioinformatics Knowledge Transmission (training, learning, and teaching): Overview and flexible comparison of computer based training approaches. http://arxiv.org/abs/1310.8383

Goff, Q., Stephen A; Zhang. (2013). Heterosis in elite hybrid rice: Speculation on the genetic and biochemical mechanisms. 16(2), 221–227. https://doi.org/10.1016/j.pbi.2013.03.009

Gorton, K., Ian; Liu, Yan; Lansing, Carina; Elsethagen, Todd; Kleese van Dam. (2013). Build less code deliver more science: An experience report on composing scientific environments using component-based and commodity software platforms. 159. https://doi.org/10.1145/2465449.2465452

Gregory, E. L. M. B. F. L. B. D. (2013). EPIC CoGE- a unified browser for Epigenetics.

Harris, M., S. E. ;. Bellino. (2013). DNA Barcoding from NYC to Belize. 342(6165), 1462–1463. https://doi.org/10.1126/science.1230006

Hofberger, M., Johannes A. ;. Lyons, Eric; Edger, Patrick P. ;. Chris Pires, J. ;. Eric Schranz. (2013). Whole Genome and Tandem Duplicate Retention Facilitated Glucosinolate Pathway Diversification in the Mustard Family. 5(11), 2155–2173. https://doi.org/10.1093/gbe/evt162

Ibarra-Laclette, L., Enrique; Lyons, Eric; Hernández-Guzmán, Gustavo; Pérez-Torres, Claudia Anahí; Carretero-Paulet, Lorenzo; Chang, Tien-Hao; Lan, Tianying; Welch, Andreanna J. ;. Juárez, María Jazmín Abraham; Simpson, June; Fernández-Cortés, Araceli; Arteaga-Vázquez, Mario; Góngora-Castillo, Elsa; Acevedo-Hernández, Gustavo; Schuster, Stephan C. ;. Himmelbauer, Heinz; Minoche, André E. ;. Xu, Sen; Lynch, Michael; Oropeza-Aburto, Araceli; Cervantes-Pérez, Sergio Alan; de Jesús Ortega-Estrada, María; Cervantes-Luevano, Jacob Israel; Michael, Todd P. ;. Mockler, Todd; Bryant, Douglas; Herrera-Estrella, Alfredo; Albert, Victor A. ;. Herrera-Estrella. (2013). Architecture and evolution of a minute plant genome. 498(7452), 94–98. https://doi.org/10.1038/nature12132

Izquierdo-Carrasco, A., Fernando; Alachiotis, Nikolaos; Berger, Simon; Flouri, Tomas; Pissis, Solon P; Stamatakis. (2013). A generic vectorization scheme and a gpu kernel for the phylogenetic likelihood library. 530–538.

Jordan, S., Chris; Esteva, Maria; Walling, David; Urban, Tomilsav; Kulasekaran. (2013). Responses to Data Management Requirements at the National Scale. 64.

Joshi, D., Trupti; Fitzpatrick, Michael R. ;. Chen, Shiyuan; Liu, Yang; Zhang, Hongxin; Endacott, Ryan Z. ;. Gaudiello, Eric C. ;. Stacey, Gary; Nguyen, Henry T. ;. Xu. (2013). Soybean knowledge base (SoyKB): Bridging the gap between soybean translational genomics and breeding. 42–44. https://doi.org/10.1109/BIBM.2013.6732755

Khoury, P. C., Colin K. ;. Greene, Stephanie; Wiersema, John; Maxted, Nigel; Jarvis, Andy; Struik. (2013). An Inventory of Crop Wild Relatives of the United States. 53(4), 1496. https://doi.org/10.2135/cropsci2012.10.0585

Kim, J. (2013). Data sharing and its implications for academic libraries. 114(12-Nov), 494–506.

Kluyver, C. P., Thomas A. ;. Osborne. (2013). Taxonome: A software package for linking biological species data. 3(5), 1262–1265. https://doi.org/10.1002/ece3.529

Koehbach, C. W., Johannes; Attah, Alfred F. ;. Berger, Andreas; Hellinger, Roland; Kutchan, Toni M. ;. Carpenter, Eric J. ;. Rolf, Megan; Sonibare, Mubo A. ;. Moody, Jones O. ;. Wong, Gane Ka-Shu; Dessein, Steven; Greger, Harald; Gruber. (2013). Cyclotide discovery in Gentianales revisited-identification and characterization of cyclic cystine-knot peptides and their phylogenetic distribution in Rubiaceae plants: Cyclotide Discovery in Gentianales Revisited. 100(5), 438–452. https://doi.org/10.1002/bip.22328

Koenig, J. N., D. ;. Jimenez-Gomez, J. M. ;. Kimura, S. ;. Fulop, D. ;. Chitwood, D. H. ;. Headland, L. R. ;. Kumar, R. ;. Covington, M. F. ;. Devisetty, U. K. ;. Tat, A. V. ;. Tohge, T. ;. Bolger, A. ;. Schneeberger, K. ;. Ossowski, S. ;. Lanz, C. ;. Xiong, G. ;. Taylor-Teeples, M. ;. Brady, S. M. ;. Pauly, M. ;. Weigel, D. ;. Usadel, B. ;. Fernie, A. R. ;. Peng, J. ;. Sinha, N. R. ;. Maloof. (2013). Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato. 110(28), E2655–E2662. https://doi.org/10.1073/pnas.1309606110

Koesterke, J. M., L. ;. Milfeld, K. ;. Vaughn, M. W. ;. Stanzione, D. ;. Koltes, J. E. ;. Weeks, N. T. ;. Reecy. (2013). Optimizing the PCIT algorithm on stampede’s Xeon and Xeon Phi processors for faster discovery of biological networks. 1. https://doi.org/10.1145/2484762.2484794

Kültz, A. E., Dietmar; Clayton, David F. ;. Robinson, Gene E. ;. Albertson, Craig; Carey, Hannah V. ;. Cummings, Molly E. ;. Dewar, Ken; Edwards, Scott V. ;. Hofmann, Hans A. ;. Gross, Louis J. ;. Kingsolver, Joel G. ;. Meaney, Michael J. ;. Schlinger, Barney A. ;. Shingleton, Alexander W. ;. Sokolowski, Marla B. ;. Somero, George N. ;. Stanzione, Daniel C. ;. Todgham. (2013). New Frontiers for Organismal Biology. 63(6), 464–471. https://doi.org/10.1525/bio.2013.63.6.8

Lee, R. K., Michael T; Peet. (2013). VegBank: A permanent online repository for international plot and relevé data. 66.

Lehan, B. A., Nora E. ;. Murphy, Julia R. ;. Thorburn, Lukas P. ;. Bradley. (2013). Accidental introductions are an important source of invasive plants in the continental United States. 100(7), 1287–1293. https://doi.org/10.3732/ajb.1300061

Lisch, D. (2013). How important are transposons for plant evolution? 14(1), 49–61. https://doi.org/10.1038/nrg3374

Liseron-Monfils, M. N., Christophe; Lewis, Tim; Ashlock, Daniel; McNicholas, Paul D; Fauteux, François; Strömvik, Martina; Raizada. (2013). Promzea: A pipeline for discovery of co-regulatory motifs in maize and other plant species and its application to the anthocyanin and phlobaphene biosynthetic pathways and the Maize Development Atlas. 13(1), 42. https://doi.org/10.1186/1471-2229-13-42

López, J. F., R. ;. San-Juan. (2013). An e-Science project in Astrodynamics and Celestial Mechanics fields. 184(5), 1381–1386. https://doi.org/10.1016/j.cpc.2013.01.003

Matasci, S., Naim; McKay. (2013). Phylogenetic Analysis with the iPlant Discovery Environment. 42(1), 6.13.1-6.13.13. https://doi.org/10.1002/0471250953.bi0613s42

McCarthy, E., F. M. ;. Lyons. (2013). From data to function: Functional modeling of poultry genomics data. 92(9), 2519–2529. https://doi.org/10.3382/ps.2012-02808

McKay, C., Sheldon J. ;. Skidmore, Edwin J. ;. LaRose, Christopher J. ;. Mercer, Andre W. ;. Noutsos. (2013). Cloud Computing with iPlant Atmosphere: Cloud Computing with iPlant Atmosphere (J. R. Bateman Alex; Pearson, William R. ;. Stein, Lincoln D. ;. Stormo, Gary D. ;. Yates, Ed.; p. 9.15.1-9.15.20). http://doi.wiley.com/10.1002/0471250953.bi0915s43

Micklos, D. A., Hilgert, U., & Nash, B. (2013). Genome science: A practical and conceptual introduction to molecular genetic analysis in eukaryotes. Cold Spring Harbor Laboratory Press.

Miller, S., Allison J. ;. Matasci, Naim; Schwaninger, Heidi; Aradhya, Mallikarjuna K. ;. Prins, Bernard; Zhong, Gan-Yuan; Simon, Charles; Buckler, Edward S. ;. Myles. (2013). Vitis Phylogenomics: Hybridization Intensities from a SNP Array Outperform Genotype Calls. 8(11), e78680. https://doi.org/10.1371/journal.pone.0078680

Miller, W., Mark A. ;. Schwartz, Terri; Pfeiffer. (2013). Embedding CIPRES science gateway capabilities in phylogenetics software environments. 1. https://doi.org/10.1145/2484762.2484806

Ming, J., Ray; VanBuren, Robert; Liu, Yanling; Yang, Mei; Han, Yuepeng; Li, Lei-Ting; Zhang, Qiong; Kim, Min-Jeong; Schatz, Michael C; Campbell, Michael; Li, Jingping; Bowers, John E; Tang, Haibao; Lyons, Eric; Ferguson, Ann A; Narzisi, Giuseppe; Nelson, David R; Blaby-Haas, Crysten E; Gschwend, Andrea R; Jiao, Yuannian; Der, Joshua P; Zeng, Fanchang; Han, Jennifer; Min, Xiang; Hudson, Karen A; Singh, Ratnesh; Grennan, Aleel K; Karpowicz, Steven J; Watling, Jennifer R; Ito, Kikukatsu; Robinson, Sharon A; Hudson, Matthew E; Yu, Qingyi; Mockler, Todd C; Carroll, Andrew; Zheng, Yun; Sunkar, Ramanjulu; Jia, Ruizong; Chen, Nancy; Arro, Jie; Wai, Ching; Wafula, Eric; Spence, Ashley; Han, Yanni; Xu, Liming; Zhang, Jisen; Peery, Rhiannon; Haus, Miranda J; Xiong, Wenwei; Walsh, James A; Wu, Jun; Wang, Ming-Li; Zhu, Yun J; Paull, Robert E; Britt, Anne B; Du, Chunguang; Downie, Stephen R; Schuler, Mary A; Michael, Todd P; Long, Steve P; Ort, Donald R; William Schopf, J; Gang, David R; Jiang, Ning; Yandell, Mark; dePamphilis, Claude W; Merchant, Sabeeha S; Paterson, Andrew H; Buchanan, Bob B; Li, Shaohua; Shen-Miller. (2013). Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.). 14(5), R41. https://doi.org/10.1186/gb-2013-14-5-r41

Mohan, G. P., Anup; Hacker, Thomas; Rodgers. (2013). Developing a high-volume batch submission system for earthquake engineering. 1. https://doi.org/10.1145/2484762.2484784

Moore, R. W. (2013). Extensible Generic Data Management Software. http://arxiv.org/abs/1309.5372

Moreau, S., Magali; Westlake, Timothy; Zampogna, Giulio; Popescu, George; Tian, Miaoying; Noutsos, Christos; Popescu. (2013). The Arabidopsis oligopeptidases TOP1 and TOP2 are salicylic acid targets that modulate SA-mediated signaling and the immune response. 76(4), 603–614. https://doi.org/10.1111/tpj.12320

Morueta-Holme, J.-C., Naia; Enquist, Brian J. ;. McGill, Brian J. ;. Boyle, Brad; Jørgensen, Peter M. ;. Ott, Jeffrey E. ;. Peet, Robert K. ;. Šímová, Irena; Sloat, Lindsey L. ;. Thiers, Barbara; Violle, Cyrille; Wiser, Susan K. ;. Dolins, Steven; Donoghue, John C. ;. Kraft, Nathan J. B. ;. Regetz, Jim; Schildhauer, Mark; Spencer, Nick; Svenning. (2013). Habitat area and climate stability determine geographical variation in plant species range sizes. 16(12), 1446–1454. https://doi.org/10.1111/ele.12184

Narjala, L. (2013). Color based classification of circular markers for the identification of experimental units.

Oaks, J. R. (2013). Islands and Integrals: Processes of Diversification in an Island Archipelago and Bayesian Methods of Comparative Phylogeographical Model Choice.

Oliver, S. J., Shannon L. ;. Lenards, Andrew J. ;. Barthelson, Roger A. ;. Merchant, Nirav; McKay. (2013). Using the iPlant Collaborative Discovery Environment. 42(1), 1.22.1-1.22.26. https://doi.org/10.1002/0471250953.bi0122s42

Predoehl, K., Andrew; Morris, Scott; Barnard. (2013). A statistical model for recreational trails in aerial images. 337–344.

Ragupathy, S., Raja; You, Frank M. ;. Cloutier. (2013). Arguments for standardizing transposable element annotation in plant genomes. 18(7), 367–376. https://doi.org/10.1016/j.tplants.2013.03.005

Rajasekar, J., Arcot; Kum, Hye-Chung; Crosas, Merce; Crabtree, Jonathan; Sankaran, Sharlini; Lander, Howard; Carsey, Thomas; King, Gary; Zhan. (2013). The databridge. 2(1), 1–14.

Rajasekar, S., Arcot; Carsey, Tom; Crabtree, Jonathan; Crosas, Merce; King, Gary; Kum, Hye-Chung; Lander, Howard; Sankaran. (2013). Design of the DataBridge: A System for Sociometric Analysis of Long tail Science Data.

Ramamoorthy, A. M., Vellaisamy; Dhingra, Sourabh; Kincaid, Alexander; Shantappa, Sourabha; Feng, Xuehuan; Calvo. (2013). The Putative C2H2 Transcription Factor MtfA Is a Novel Regulator of Secondary Metabolism and Morphogenesis in Aspergillus nidulans. 8(9), e74122. https://doi.org/10.1371/journal.pone.0074122

Rodrigo, B., Allen; Alberts, Susan; Cranston, Karen; Kingsolver, Joel; Lapp, Hilmar; McClain, Craig; Smith, Robin; Vision, Todd; Weintraub, Jory; Wiegmann. (2013). Science Incubators: Synthesis Centers and Their Role in the Research Ecosystem. 11(1), e1001468. https://doi.org/10.1371/journal.pbio.1001468

Rothfels, K. M., Carl J. ;. Larsson, Anders; Li, Fay-Wei; Sigel, Erin M. ;. Huiet, Layne; Burge, Dylan O. ;. Ruhsam, Markus; Graham, Sean W. ;. Stevenson, Dennis W. ;. Wong, Gane Ka-Shu; Korall, Petra; Pryer. (2013). Transcriptome-Mining for Single-Copy Nuclear Markers in Ferns. 8(10), e76957. https://doi.org/10.1371/journal.pone.0076957

Science, A. of, Electrical, E. I. of, & Society, E. E. I. C. (Eds.). (2013). 2013 International Conference on Social Computing (SocialCom 2013): Washington, DC, USA, 8—14 September 2013 ; [in conjunction with the 2013 ASE/IEEE International Conference on Privacy, Security, Risk and Trust (PASSAT 2013), the 2013 ASE/IEEE International Conference on Big Data (BigData 2013), the 2013 ASE/IEEE International Conference on Economic Computing (EconCom 2013) and the 2013 ASE/IEEE International Conference on Biomedical Computing (BioMedCom 2013) ; including the Workshop on Applications and Theories for Scientific Big Data (ATSBD 2013)].

Service, R. F. (2013). Biology’s Dry Future. 342(6155), 186–189. https://doi.org/10.1126/science.342.6155.186

Soderlund, D. R., Carol; Nelson, William; Willer, Mark; Gang. (2013). TCW: Transcriptome Computational Workbench. 8(7), e69401. https://doi.org/10.1371/journal.pone.0069401

Soltis, D. E., Pamela S. ;. Soltis. (2013). Angiosperm Phylogeny: A Framework for Studies of Genome Evolution (J. F. Greilhuber Johann; Dolezel, Jaroslav; Wendel, Ed.; pp. 11-Jan). http://www.springerlink.com/index/10.1007/978-3-7091-1160-4_1

Soltis, W. B., Douglas E; Gitzendanner, Matthew A; Stull, Gregory; Chester, Michael; Chanderbali, Andre; Chamala, Srikar; Jordon-Thaden, Ingrid; Soltis, Pamela S; Schnable, Patrick S; Barbazuk. (2013). The potential of genomics in plant systematics. 62(5), 886–898.

Spalding, N. M. N. M. B. S. M. K. K. E. (2013). Enabling Cloud and GRid Powered Image Phenotyping.

Stanzione, D. C. (2013, May 21). Keynote: The iPlant Collaborative: A Life Sciences Cyberinfrastructure for the 21st Century.

Stein, J. J. L. C. N. L. W. R. B. F. W. N. M. E. L. N. H. A. L. S. M. M. V. D. S. S. A. G. D. W. (2013). Biological Computing Using the iPlant Discovery Environment.

Stoltzfus, G., Arlin; Lapp, Hilmar; Matasci, Naim; Deus, Helena; Sidlauskas, Brian; Zmasek, Christian M; Vaidya, Gaurav; Pontelli, Enrico; Cranston, Karen; Vos, Rutger; Webb, Campbell O; Harmon, Luke J; Pirrung, Megan; O’Meara, Brian; Pennell, Matthew W; Mirarab, Siavash; Rosenberg, Michael S; Balhoff, James P; Bik, Holly M; Heath, Tracy A; Midford, Peter E; Brown, Joseph W; McTavish, Emily Jane; Sukumaran, Jeet; Westneat, Mark; Alfaro, Michael E; Steele, Aaron; Jordan. (2013). Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient. 14(1), 158. https://doi.org/10.1186/1471-2105-14-158

Stull, M. A., Gregory W. ;. Moore, Michael J. ;. Mandala, Venkata S. ;. Douglas, Norman A. ;. Kates, Heather-Rose; Qi, Xinshuai; Brockington, Samuel F. ;. Soltis, Pamela S. ;. Soltis, Douglas E. ;. Gitzendanner. (2013). A Targeted Enrichment Strategy for Massively Parallel Sequencing of Angiosperm Plastid Genomes. 1(2), 1200497. https://doi.org/10.3732/apps.1200497

Swenson, R., Shel; Simmhan, Yogesh; Prasanna, Viktor; Parashar, Manish; Riedy, Jason; Bader, David; Vuduc. (2013). Sustainable Software Development for Next-Gen Sequencing (NGS) Bioinformatics on Emerging Platforms. http://arxiv.org/abs/1309.1828

Tan, S., Wei; Blake, M. Brian; Saleh, Iman; Dustdar. (2013). Social-Network-Sourced Big Data Analytics. 17(5), 62–69. https://doi.org/10.1109/MIC.2013.100

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