2013 Publications

Academy of Science and Engineering, Institute of Electrical and Electronics Engineers, & IEEE Computer Society (Eds.). (2013). 2013 International Conference on Social Computing (SocialCom 2013): Washington, DC, USA, 8 - 14 September 2013 ; [in conjunction with the 2013 ASE/IEEE International Conference on Privacy, Security, Risk and Trust (PASSAT 2013), the 2013 ASE/IEEE International Conference on Big Data (BigData 2013), the 2013 ASE/IEEE International Conference on Economic Computing (EconCom 2013) and the 2013 ASE/IEEE International Conference on Biomedical Computing (BioMedCom 2013) ; including the Workshop on Applications and Theories for Scientific Big Data (ATSBD 2013)]. IEEE.
Amborella Genome Project, Albert, V. A., Barbazuk, W. B., dePamphilis, C. W., Der, J. P., Leebens-Mack, J., Ma, H., Palmer, J. D., Rounsley, S., Sankoff, D., Schuster, S. C., Soltis, D. E., Soltis, P. S., Wessler, S. R., Wing, R. A., Albert, V. A., Ammiraju, J. S. S., Barbazuk, W. B., Chamala, S., … Tomsho, L. (2013). The Amborella Genome and the Evolution of Flowering Plants. Science, 342(6165), 1241089–1241089. https://doi.org/10.1126/science.1241089
Barton, C., Iliopoulos, C. S., Lee, I., Mouchard, L., Park, K., & Pissis, S. P. (2014). Extending alignments with k -mismatches and ℓ -gaps. Theoretical Computer Science, 525, 80–88. https://doi.org/10.1016/j.tcs.2013.06.012
Bayzid, M. S., & Warnow, T. (2013). Naive binning improves phylogenomic analyses. Bioinformatics, 29(18), 2277–2284. https://doi.org/10.1093/bioinformatics/btt394
Beaulieu, J. M., & Donoghue, M. J. (2013). FRUIT EVOLUTION AND DIVERSIFICATION IN CAMPANULID ANGIOSPERMS: CAMPANULID FRUIT EVOLUTION. Evolution, 67(11), 3132–3144. https://doi.org/10.1111/evo.12180
Beaulieu, J. M., O’Meara, B. C., & Donoghue, M. J. (2013). Identifying Hidden Rate Changes in the Evolution of a Binary Morphological Character: The Evolution of Plant Habit in Campanulid Angiosperms. Systematic Biology, 62(5), 725–737. https://doi.org/10.1093/sysbio/syt034
Boyle, B., Hopkins, N., Lu, Z., Raygoza Garay, J. A., Mozzherin, D., Rees, T., Matasci, N., Narro, M. L., Piel, W. H., Mckay, S. J., Lowry, S., Freeland, C., Peet, R. K., & Enquist, B. J. (2013). The taxonomic name resolution service: An online tool for automated standardization of plant names. BMC Bioinformatics, 14(1), 16. https://doi.org/10.1186/1471-2105-14-16
Burleigh, G., Alphonse, K., Alverson, A. J., Bik, H. M., Blank, C., Cirranello, A. L., Cui, H., Daly, M., Dietterich, T. G., Gasparich, G., Irvine, J., Julius, M., Kaufman, S., Law, E., Liu, J., Moore, L., O’Leary, M. A., Passarotti, M., Ranade, S., … Yu, M. (2013). Next-generation phenomics for the Tree of Life. PLoS Currents. https://doi.org/10.1371/currents.tol.085c713acafc8711b2ff7010a4b03733
Busov, V. (2013). The Promise of Genetics and Beyond. Forest Ideas, 19(2), 107–128.
Campbell, M. S., Law, M., Holt, C., Stein, J. C., Moghe, G. D., Hufnagel, D. E., Lei, J., Achawanantakun, R., Jiao, D., Lawrence, C. J., Ware, D., Shiu, S.-H., Childs, K. L., Sun, Y., Jiang, N., & Yandell, M. (2014). MAKER-P: A Tool Kit for the Rapid Creation, Management, and Quality Control of Plant Genome Annotations. Plant Physiology, 164(2), 513–524. https://doi.org/10.1104/pp.113.230144
Chamberlain, S. A., & Szöcs, E. (2013). taxize: Taxonomic search and retrieval in R. F1000Research, 2, 191. https://doi.org/10.12688/f1000research.2-191.v2
Chen, E. C., Najar, C. F. B. A., Zheng, C., Brandts, A., Lyons, E., Tang, H., Carretero-Paulet, L., Albert, V. A., & Sankoff, D. (2013). The dynamics of functional classes of plant genes in rediploidized ancient polyploids. BMC Bioinformatics, 14, S19.
Chen, H., & Wang, X. (2013). CrusView: A Java-Based Visualization Platform for Comparative Genomics Analyses in Brassicaceae Species. Plant Physiology, 163(1), 354–362. https://doi.org/10.1104/pp.113.219444
Cheung, A. Y., Palanivelu, R., Tang, W.-H., Xue, H.-W., & Yang, W.-C. (2013). Pollen and Plant Reproduction Biology: Blooming from East to West. Molecular Plant, 6(4), 995–997. https://doi.org/10.1093/mp/sst108
Christou, M., Flouri, T., Iliopoulos, C. S., Janoušek, J., Melichar, B., Pissis, S. P., & Žďárek, J. (2013). Tree template matching in unranked ordered trees. Journal of Discrete Algorithms, 20, 51–60. https://doi.org/10.1016/j.jda.2013.02.001
Crochemore, M., Iliopoulos, C. S., Kociumaka, T., Kubica, M., Langiu, A., Pissis, S. P., Radoszewski, J., Rytter, W., & Walen, T. (2013). Order-Preserving Suffix Trees and Their Algorithmic Applications. ArXiv:1303.6872 [Cs]. http://arxiv.org/abs/1303.6872
Crochemore, M., Iliopoulos, C. S., Kociumaka, T., Kubica, M., Langiu, A., Pissis, S. P., Radoszewski, J., Rytter, W., & Waleń, T. (2013). Order-preserving incomplete suffix trees and order-preserving indexes. International Symposium on String Processing and Information Retrieval, 84–95.
Deck, J., Barker, K., Beaman, R., Buttigieg, P. L., Dröge, G., Guralnick, R., Miller, C., Tuama, É. Ó., Murrell, Z., Parr, C., Robbins, B., Schigel, D., Stucky, B., Walls, R., Wieczorek, J., Morrison, N., & Wooley, J. (2013). Clarifying Concepts and Terms in Biodiversity Informatics. Standards in Genomic Sciences, 8(2), 352–359. https://doi.org/10.4056/sigs.3907833
Del Rio, N., Villanueva-Rosales, N., Pennington, D., Benedict, K., Stewart, A., & Grady, C. (2013). Elseweb meets sadi: Supporting data-to-model integration for biodiversity forecasting. 2013 AAAI Fall Symposium Series.
Dhondt, S., Wuyts, N., & Inzé, D. (2013). Cell to whole-plant phenotyping: The best is yet to come. Trends in Plant Science, 18(8), 428–439. https://doi.org/10.1016/j.tplants.2013.04.008
Dooley, R., & Hanlon, M. R. (2015). Recipes 2.0: Building for today and tomorrow: RECIPES 2.0: BUILDING FOR TODAY AND TOMORROW. Concurrency and Computation: Practice and Experience, 27(2), 258–270. https://doi.org/10.1002/cpe.3285
Eichten, Steven R, Briskine, R., Song, J., Li, Q., Swanson-Wagner, R., Hermanson, P. J., Waters, A. J., Starr, E., West, P. T., Tiffin, P., & others. (2013). Epigenetic and genetic influences on DNA methylation variation in maize populations. The Plant Cell, 25(8), 2783–2797.
Eichten, Steven R., Vaughn, M. W., Hermanson, P. J., & Springer, N. M. (2013). Variation in DNA Methylation Patterns is More Common among Maize Inbreds than among Tissues. The Plant Genome, 6(2), 0. https://doi.org/10.3835/plantgenome2012.06.0009
Eichten, Steven Richard. (2013). Identification and characterization of DNA methylation variation within maize.
Eric Lyons, Matthew Bomhoff, Fan Li, & Brian D. Gregory. (2013). EPIC CoGE- a unified browser for Epigenetics. Proceedings from Plant and Animal Gemone XXI.
Fick, R. H. J., Fedorov, D., Roeder, A. H. K., & Manjunath, B. S. (2013). Simultaneous cell tracking and image alignment in 3D CLSM imagery of growing Arabidopsis thaliana sepals. 2013 IEEE 10th International Symposium on Biomedical Imaging, 914–917. https://doi.org/10.1109/ISBI.2013.6556624
Flouri, T., Iliopoulos, C. S., Kociumaka, T., Pissis, S. P., Puglisi, S. J., Smyth, W. F., & Tyczyński, W. (2013). Enhanced string covering. Theoretical Computer Science, 506, 102–114.
Flouri, T., Kobert, K., Pissis, S. P., & Stamatakis, A. (2013). An optimal algorithm for computing all subtree repeats in trees. International Workshop on Combinatorial Algorithms, 269–282.
Fox, G. C., & Gannon, D. (2012). Using Clouds for Technical Computing. High Performance Computing Workshop (1), 81–102.
Fritz, E. R., Koltes, J. E., & Reecy, J. M. (2013). Identification of SNPs in Water Buffalo using next generation sequencing data. Proceedings from Plant and Animal Gemone XXI.
Gehring, C., Flores-Rentería, D., Sthultz, C. M., Leonard, T. M., Flores-Rentería, L., Whipple, A. V., & Whitham, T. G. (2014). Plant genetics and interspecific competitive interactions determine ectomycorrhizal fungal community responses to climate change. Molecular Ecology, 23(6), 1379–1391. https://doi.org/10.1111/mec.12503
Gessler, D. D., Bulka, B., Sirin, E., Vasquez-Gross, H., Yu, J., & Wegrzyn, J. (2013). IPlant SSWAP (Simple Semantic Web Architecture and Protocol) enables semantic pipelines for biodiversity. Semantics for Biodiversity (S4BioDiv 2013), 101.
Gessler, D. D., Joslyn, C., Verspoor, K., & Critchlow, T. (2013). A posteriori ontology engineering for data-driven science. Data Intensive Science.
Gnimpieba, E. Z., Anderson, B. S., Chango, A., & Lushbough, C. M. (2013). RESTful API in life science research systems and data integration challenges: Linking metabolic pathway, metabolic network, gene and publication. Journal of Communication and Computer, 10, 1196–1199.
Gnimpieba, E. Z., Jennewein, D., Fuhrman, L., & Lushbough, C. M. (2013a). Bioinformatics Knowledge Transmission (training, learning, and teaching): Overview and flexible comparison of computer based training approaches. ArXiv:1310.8383 [Cs, q-Bio]. http://arxiv.org/abs/1310.8383
Gnimpieba, E. Z., Jennewein, D., Fuhrman, L., & Lushbough, C. M. (2013b). Multidisciplinarity in Knowledge Transmision Management System (KTMS) evaluation. Proceedings of the International Conference on E-Learning, e-Business, Enterprise Information Systems, and e-Government (EEE), 238.
Goff, S. A., & Zhang, Q. (2013). Heterosis in elite hybrid rice: Speculation on the genetic and biochemical mechanisms. Current Opinion in Plant Biology, 16(2), 221–227. https://doi.org/10.1016/j.pbi.2013.03.009
Gorton, I. (2014). Cyberinfrastructures: Bridging the Divide between Scientific Research and Software Engineering. Computer, 47(8), 48–55. https://doi.org/10.1109/MC.2013.336
Gorton, I., Liu, Y., Lansing, C., Elsethagen, T., & Kleese van Dam, K. (2013). Build less code deliver more science: An experience report on composing scientific environments using component-based and commodity software platforms. Proceedings of the 16th International ACM Sigsoft Symposium on Component-Based Software Engineering - CBSE ’13, 159. https://doi.org/10.1145/2465449.2465452
Harris, S. E., & Bellino, M. (2013). DNA Barcoding from NYC to Belize. Science, 342(6165), 1462–1463. https://doi.org/10.1126/science.1230006
Hofberger, J. A., Lyons, E., Edger, P. P., Chris Pires, J., & Eric Schranz, M. (2013). Whole Genome and Tandem Duplicate Retention Facilitated Glucosinolate Pathway Diversification in the Mustard Family. Genome Biology and Evolution, 5(11), 2155–2173. https://doi.org/10.1093/gbe/evt162
Ibarra-Laclette, E., Lyons, E., Hernández-Guzmán, G., Pérez-Torres, C. A., Carretero-Paulet, L., Chang, T.-H., Lan, T., Welch, A. J., Juárez, M. J. A., Simpson, J., Fernández-Cortés, A., Arteaga-Vázquez, M., Góngora-Castillo, E., Acevedo-Hernández, G., Schuster, S. C., Himmelbauer, H., Minoche, A. E., Xu, S., Lynch, M., … Herrera-Estrella, L. (2013). Architecture and evolution of a minute plant genome. Nature, 498(7452), 94–98. https://doi.org/10.1038/nature12132
Izquierdo-Carrasco, F., Alachiotis, N., Berger, S., Flouri, T., Pissis, S. P., & Stamatakis, A. (2013). A generic vectorization scheme and a gpu kernel for the phylogenetic likelihood library. 2013 IEEE International Symposium on Parallel & Distributed Processing, Workshops and Phd Forum, 530–538.
Jordan, C., Esteva, M., Walling, D., Urban, T., & Kulasekaran, S. (2013). Responses to Data Management Requirements at the National Scale. Research Data Management, 64.
Joshi, T., Fitzpatrick, M. R., Chen, S., Liu, Y., Zhang, H., Endacott, R. Z., Gaudiello, E. C., Stacey, G., Nguyen, H. T., & Xu, D. (2013). Soybean knowledge base (SoyKB): Bridging the gap between soybean translational genomics and breeding. 2013 IEEE International Conference on Bioinformatics and Biomedicine, 42–44. https://doi.org/10.1109/BIBM.2013.6732755
Khoury, C. K., Greene, S., Wiersema, J., Maxted, N., Jarvis, A., & Struik, P. C. (2013). An Inventory of Crop Wild Relatives of the United States. Crop Science, 53(4), 1496. https://doi.org/10.2135/cropsci2012.10.0585
Kim, J. (2013). Data sharing and its implications for academic libraries. New Library World, 114(11/12), 494–506.
Kluyver, T. A., & Osborne, C. P. (2013). Taxonome: A software package for linking biological species data. Ecology and Evolution, 3(5), 1262–1265. https://doi.org/10.1002/ece3.529
Kociumaka, T., Pissis, S. P., Radoszewski, J., Rytter, W., & Waleń, T. (2015). Fast algorithm for partial covers in words. Algorithmica, 73(1), 217–233.
Koehbach, J., Attah, A. F., Berger, A., Hellinger, R., Kutchan, T. M., Carpenter, E. J., Rolf, M., Sonibare, M. A., Moody, J. O., Wong, G. K.-S., Dessein, S., Greger, H., & Gruber, C. W. (2013). Cyclotide discovery in Gentianales revisited-identification and characterization of cyclic cystine-knot peptides and their phylogenetic distribution in Rubiaceae plants: Cyclotide Discovery in Gentianales Revisited. Biopolymers, 100(5), 438–452. https://doi.org/10.1002/bip.22328
Koenig, D., Jimenez-Gomez, J. M., Kimura, S., Fulop, D., Chitwood, D. H., Headland, L. R., Kumar, R., Covington, M. F., Devisetty, U. K., Tat, A. V., Tohge, T., Bolger, A., Schneeberger, K., Ossowski, S., Lanz, C., Xiong, G., Taylor-Teeples, M., Brady, S. M., Pauly, M., … Maloof, J. N. (2013). Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato. Proceedings of the National Academy of Sciences, 110(28), E2655–E2662. https://doi.org/10.1073/pnas.1309606110
Koesterke, L., Milfeld, K., Vaughn, M. W., Stanzione, D., Koltes, J. E., Weeks, N. T., & Reecy, J. M. (2013). Optimizing the PCIT algorithm on stampede’s Xeon and Xeon Phi processors for faster discovery of biological networks. Proceedings of the Conference on Extreme Science and Engineering Discovery Environment Gateway to Discovery - XSEDE ’13, 1. https://doi.org/10.1145/2484762.2484794
Kültz, D., Clayton, D. F., Robinson, G. E., Albertson, C., Carey, H. V., Cummings, M. E., Dewar, K., Edwards, S. V., Hofmann, H. A., Gross, L. J., Kingsolver, J. G., Meaney, M. J., Schlinger, B. A., Shingleton, A. W., Sokolowski, M. B., Somero, G. N., Stanzione, D. C., & Todgham, A. E. (2013). New Frontiers for Organismal Biology. BioScience, 63(6), 464–471. https://doi.org/10.1525/bio.2013.63.6.8
LeDuc, R., Vaughn, M., Fonner, J. M., Sullivan, M., Williams, J. G., Blood, P. D., Taylor, J., & Barnett, W. (2014). Leveraging the national cyberinfrastructure for biomedical research. Journal of the American Medical Informatics Association, 21(2), 195–199. https://doi.org/10.1136/amiajnl-2013-002059
Lee, M. T., & Peet, R. K. (2013). VegBank: A permanent online repository for international plot and relevé data. Arctic Vegetation Archive (AVA) Workshop, 66.
Lehan, N. E., Murphy, J. R., Thorburn, L. P., & Bradley, B. A. (2013). Accidental introductions are an important source of invasive plants in the continental United States. American Journal of Botany, 100(7), 1287–1293. https://doi.org/10.3732/ajb.1300061
Liseron-Monfils, C., Lewis, T., Ashlock, D., McNicholas, P. D., Fauteux, F., Strömvik, M., & Raizada, M. N. (2013). Promzea: A pipeline for discovery of co-regulatory motifs in maize and other plant species and its application to the anthocyanin and phlobaphene biosynthetic pathways and the Maize Development Atlas. BMC Plant Biology, 13(1), 42. https://doi.org/10.1186/1471-2229-13-42
López, R., & San-Juan, J. F. (2013). An e-Science project in Astrodynamics and Celestial Mechanics fields. Computer Physics Communications, 184(5), 1381–1386. https://doi.org/10.1016/j.cpc.2013.01.003
Matasci, N., & McKay, S. (2013). Phylogenetic Analysis with the iPlant Discovery Environment. Current Protocols in Bioinformatics, 42(1), 6.13.1-6.13.13. https://doi.org/10.1002/0471250953.bi0613s42
McCarthy, F. M., & Lyons, E. (2013). From data to function: Functional modeling of poultry genomics data. Poultry Science, 92(9), 2519–2529. https://doi.org/10.3382/ps.2012-02808
McKay, S. J., Skidmore, E. J., LaRose, C. J., Mercer, A. W., & Noutsos, C. (2013). Cloud Computing with iPlant Atmosphere: Cloud Computing with iPlant Atmosphere. In A. Bateman, W. R. Pearson, L. D. Stein, G. D. Stormo, & J. R. Yates (Eds.), Current Protocols in Bioinformatics (p. 9.15.1-9.15.20). John Wiley & Sons, Inc. https://doi.org/10.1002/0471250953.bi0915s43
Miller, A. J., Matasci, N., Schwaninger, H., Aradhya, M. K., Prins, B., Zhong, G.-Y., Simon, C., Buckler, E. S., & Myles, S. (2013). Vitis Phylogenomics: Hybridization Intensities from a SNP Array Outperform Genotype Calls. PLoS ONE, 8(11), e78680. https://doi.org/10.1371/journal.pone.0078680
Miller, M. A., Schwartz, T., & Pfeiffer, W. (2013). Embedding CIPRES science gateway capabilities in phylogenetics software environments. Proceedings of the Conference on Extreme Science and Engineering Discovery Environment Gateway to Discovery - XSEDE ’13, 1. https://doi.org/10.1145/2484762.2484806
Minervini, M., Abdelsamea, M. M., & Tsaftaris, S. A. (2014). Image-based plant phenotyping with incremental learning and active contours. Ecological Informatics, 23, 35–48. https://doi.org/10.1016/j.ecoinf.2013.07.004
Ming, R., VanBuren, R., Liu, Y., Yang, M., Han, Y., Li, L.-T., Zhang, Q., Kim, M.-J., Schatz, M. C., Campbell, M., Li, J., Bowers, J. E., Tang, H., Lyons, E., Ferguson, A. A., Narzisi, G., Nelson, D. R., Blaby-Haas, C. E., Gschwend, A. R., … Shen-Miller, J. (2013). Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.). Genome Biology, 14(5), R41. https://doi.org/10.1186/gb-2013-14-5-r41
Mohan, A., Hacker, T., & Rodgers, G. P. (2013). Developing a high-volume batch submission system for earthquake engineering. Proceedings of the Conference on Extreme Science and Engineering Discovery Environment Gateway to Discovery - XSEDE ’13, 1. https://doi.org/10.1145/2484762.2484784
Moller, A. G., & Liang, C. (2017). MetaCRAST: reference-guided extraction of CRISPR spacers from unassembled metagenomes. PeerJ, 5, e3788.
Moore, R. W. (2013). Extensible Generic Data Management Software. ArXiv:1309.5372 [Cs]. http://arxiv.org/abs/1309.5372
Moreau, M., Westlake, T., Zampogna, G., Popescu, G., Tian, M., Noutsos, C., & Popescu, S. (2013). The Arabidopsis oligopeptidases TOP1 and TOP2 are salicylic acid targets that modulate SA-mediated signaling and the immune response. The Plant Journal, 76(4), 603–614. https://doi.org/10.1111/tpj.12320
Morueta-Holme, N., Enquist, B. J., McGill, B. J., Boyle, B., Jørgensen, P. M., Ott, J. E., Peet, R. K., Šímová, I., Sloat, L. L., Thiers, B., Violle, C., Wiser, S. K., Dolins, S., Donoghue, J. C., Kraft, N. J. B., Regetz, J., Schildhauer, M., Spencer, N., & Svenning, J.-C. (2013). Habitat area and climate stability determine geographical variation in plant species range sizes. Ecology Letters, 16(12), 1446–1454. https://doi.org/10.1111/ele.12184
Narjala, L. (2013). Color based classification of circular markers for the identification of experimental units.
Nirav Merchant, Nathan Miller, B.S. Manjunath, Kris Kvilekval, & Edgar Spalding. (2013). Enabling Cloud and GRid Powered Image Phenotyping. Proceedings from Plant and Animal Gemone XXI.
Numa, H., & Itoh, T. (2014). MEGANTE: A Web-Based System for Integrated Plant Genome Annotation. Plant and Cell Physiology, 55(1), e2–e2. https://doi.org/10.1093/pcp/pct157
Oaks, J. R. (2013). Islands and Integrals: Processes of Diversification in an Island Archipelago and Bayesian Methods of Comparative Phylogeographical Model Choice [PhD Thesis]. University of Kansas.
Oliver, S. L., Lenards, A. J., Barthelson, R. A., Merchant, N., & McKay, S. J. (2013). Using the iPlant Collaborative Discovery Environment. Current Protocols in Bioinformatics, 42(1), 1.22.1-1.22.26. https://doi.org/10.1002/0471250953.bi0122s42
Predoehl, A., Morris, S., & Barnard, K. (2013a). A statistical model for recreational trails in aerial images. Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, 337–344.
Predoehl, A., Morris, S., & Barnard, K. (2013b). A statistical model for recreational trails in aerial images. Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, 337–344.
Ragupathy, R., You, F. M., & Cloutier, S. (2013). Arguments for standardizing transposable element annotation in plant genomes. Trends in Plant Science, 18(7), 367–376. https://doi.org/10.1016/j.tplants.2013.03.005
Rajasekar, A., Carsey, T., Crabtree, J., Crosas, M., King, G., Kum, H.-C., Lander, H., & Sankaran, S. (n.d.). Design of the DataBridge: A System for Sociometric Analysis of Long tail Science Data.
Rajasekar, A., Kum, H.-C., Crosas, M., Crabtree, J., Sankaran, S., Lander, H., Carsey, T., King, G., & Zhan, J. (2013). The databridge. Science Journal, 2(1), 1–14.
Ramamoorthy, V., Dhingra, S., Kincaid, A., Shantappa, S., Feng, X., & Calvo, A. M. (2013). The Putative C2H2 Transcription Factor MtfA Is a Novel Regulator of Secondary Metabolism and Morphogenesis in Aspergillus nidulans. PLoS ONE, 8(9), e74122. https://doi.org/10.1371/journal.pone.0074122
Rhee, S. Y., & Mutwil, M. (2014). Towards revealing the functions of all genes in plants. Trends in Plant Science, 19(4), 212–221. https://doi.org/10.1016/j.tplants.2013.10.006
Rodrigo, A., Alberts, S., Cranston, K., Kingsolver, J., Lapp, H., McClain, C., Smith, R., Vision, T., Weintraub, J., & Wiegmann, B. (2013). Science Incubators: Synthesis Centers and Their Role in the Research Ecosystem. PLoS Biology, 11(1), e1001468. https://doi.org/10.1371/journal.pbio.1001468
Rothfels, C. J., Larsson, A., Li, F.-W., Sigel, E. M., Huiet, L., Burge, D. O., Ruhsam, M., Graham, S. W., Stevenson, D. W., Wong, G. K.-S., Korall, P., & Pryer, K. M. (2013). Transcriptome-Mining for Single-Copy Nuclear Markers in Ferns. PLoS ONE, 8(10), e76957. https://doi.org/10.1371/journal.pone.0076957
Service, R. F. (2013). Biology’s Dry Future. Science, 342(6155), 186–189. https://doi.org/10.1126/science.342.6155.186
Soderlund, C., Nelson, W., Willer, M., & Gang, D. R. (2013). TCW: Transcriptome Computational Workbench. PLoS ONE, 8(7), e69401. https://doi.org/10.1371/journal.pone.0069401
Soltis, D. E., Gitzendanner, M. A., Stull, G., Chester, M., Chanderbali, A., Chamala, S., Jordon-Thaden, I., Soltis, P. S., Schnable, P. S., & Barbazuk, W. B. (2013). The potential of genomics in plant systematics. Taxon, 62(5), 886–898.
Soltis, P. S., & Soltis, D. E. (2013). Angiosperm Phylogeny: A Framework for Studies of Genome Evolution. In J. Greilhuber, J. Dolezel, & J. F. Wendel (Eds.), Plant Genome Diversity Volume 2 (pp. 1–11). Springer Vienna. https://doi.org/10.1007/978-3-7091-1160-4_1
Stanzione, D. C. (2013, May 21). Keynote: The iPlant Collaborative: A Life Sciences Cyberinfrastructure for the 21st Century. From Computational Biophysics to Systems Biology (CBSB13). Computational Biophysics to Systems Biology (CBSB13), Norman, OK.
Stein, J., Jerry Lu, Christos Noutsos, Liya Wang, Roger Barthelson, Fusheng Wei, Naim Matasci, Eric Lyons, Nicole Hopkins, Andrew Lenards, Sheldon McKay, Matt Vaughn, Dan Stanzione, Stephen A. Goff, & Doreen Ware. (2013). Biological Computing Using the iPlant Discovery Environment. Biological Computing Using the IPlant Discovery Environment.
Stephen A. Goff, Qi Cai, Janko Nikolich-Zugich, & David Galbraith. (2013). Gene Exression in Inbred and Hybrid Mice, Young and Old. Proceedings from Plant and Animal Gemone XXI.
Stoltzfus, A., Lapp, H., Matasci, N., Deus, H., Sidlauskas, B., Zmasek, C. M., Vaidya, G., Pontelli, E., Cranston, K., Vos, R., Webb, C. O., Harmon, L. J., Pirrung, M., O’Meara, B., Pennell, M. W., Mirarab, S., Rosenberg, M. S., Balhoff, J. P., Bik, H. M., … Jordan, G. (2013). Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient. BMC Bioinformatics, 14(1), 158. https://doi.org/10.1186/1471-2105-14-158
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